View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13791_high_7 (Length: 466)
Name: NF13791_high_7
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 267 - 439
Target Start/End: Complemental strand, 20099928 - 20099756
Alignment:
| Q |
267 |
agaagagaacaatggaacacattatcaatctttgaatgctccggtaaggccagcttatacacaactgataaaatgcgcttcagaactaagtaaggtccgt |
366 |
Q |
| |
|
||||||||| |||| || |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20099928 |
agaagagaataatgcaatacattatcaatcttagaatgcttcggtaaggccagcttatacacaactgataaaatgcgctccagaactaagtaaggtccgt |
20099829 |
T |
|
| Q |
367 |
aaaagcgcttggagagcttctgataacgctcactagacaatgaggactgcctatacggcagaagcttaacata |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20099828 |
aaaagcgcttggagagcttctgataacgctcactagacaatgaggactgcctatacggcaaaagcttaacata |
20099756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 20101461 - 20101312
Alignment:
| Q |
1 |
gataggaaagagagaagtgttattatttttgaatggtcaaaaatacccttgaatcaaaagatatgttaaaaaccaatctaatgtaacaagaaaaaattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20101461 |
gataggaaagagagaagtgttattatttttgaatggtcaaaaatacccttgaatcaaaagatatgttaaaaaccaatctaatgtaacaagaaaaatttca |
20101362 |
T |
|
| Q |
101 |
attaacttctcccctctaaaaactaaattcaattaacttcagttaatata |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20101361 |
attaacttctcccctctaaaaactgaattcaattaacttcagttaatata |
20101312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 263 - 448
Target Start/End: Complemental strand, 9489290 - 9489107
Alignment:
| Q |
263 |
tttgagaagagaacaatggaacacattatcaatctttgaatgctccggtaaggccagcttatacacaactgataaaatgcgcttcagaactaagtaaggt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
9489290 |
tttgagaagagaacaatggaacacattatgaatcttagaatgctccggtaaggccagcttatacacaactgatcaaatgcgctctaaaactaagtaaggt |
9489191 |
T |
|
| Q |
363 |
ccgtaaaagcgcttggagagcttctgataacgctcactagacaatgaggactgcctatacggcagaagcttaacatacacccatat |
448 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
9489190 |
ccgtaaaagcgcttggagagctt-tgataacgctcactagacaatgaggacttcctatacggccgaagc-taacatacacccatat |
9489107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University