View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_9 (Length: 434)
Name: NF13791_high_9
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Complemental strand, 9570348 - 9569927
Alignment:
| Q |
6 |
cagagaacttttgcattgtcaacctccctttcccttctcactctcgtccatgaaagaaaagaaagagagaatttcggaggnnnnnnnnn-gataagaata |
104 |
Q |
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| T |
9570348 |
cagagaacatttgcattgtcaacctccctttcccttctcactctcgtccatgaaagaaaagaaagagagaatttcggaggaaaaaaaaaagataagaata |
9570249 |
T |
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| Q |
105 |
ataagaacagctgactaccaattgtgaaatctttaaagggatcaagactggtctgccgaagttttcgatgcacccattgaagcaactgcaggaggtaaaa |
204 |
Q |
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| T |
9570248 |
ataagaacagctgactaccaattgtgaaatctttaaagggatcaagattggtctgccgaagttttcgatgcacccattgaagcaactgcaggaggtaaaa |
9570149 |
T |
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| Q |
205 |
ggtgtggatcaagccaaaggtttgaaagaacattttcatcataaattgttaagagtttagacataccttcattttgactctttcttaatttgatagccta |
304 |
Q |
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| T |
9570148 |
ggtgtggatcaagccaaaggtttgaaagaacattttcatcataaattgttaagagtttagacataccttcattttgactctttcttaatttgatagccaa |
9570049 |
T |
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| Q |
305 |
tgtctcccacttaactg----attaggctggtagttataaataatgagaatggaaaaatgtctccaagattggttggttgtgatggataacgtggaaagg |
400 |
Q |
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| T |
9570048 |
tgtctcccacttaactgattaattaggctggtagttataaataatgagaatggaaaaatgtctccaagattgggtggttgtgatggataacgtggaaagg |
9569949 |
T |
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| Q |
401 |
cacaaagaccttttctttgtga |
422 |
Q |
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| T |
9569948 |
cacaaagaccttttctttgtga |
9569927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 9773130 - 9773094
Alignment:
| Q |
261 |
ttagacataccttcattttgactc-tttcttaatttg |
296 |
Q |
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| T |
9773130 |
ttagacataccttcattttgactcttttcttaatttg |
9773094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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