View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13791_low_1 (Length: 728)

Name: NF13791_low_1
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13791_low_1
NF13791_low_1
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-728)||(75120-75838)
[»] chr3 (1 HSPs)
chr3 (414-707)||(618871-619164)
[»] chr6 (18 HSPs)
chr6 (473-717)||(29689073-29689317)
chr6 (479-720)||(29718259-29718503)
chr6 (525-720)||(29767101-29767296)
chr6 (539-719)||(29471945-29472125)
chr6 (522-718)||(29662668-29662863)
chr6 (484-707)||(29711646-29711864)
chr6 (473-718)||(29799774-29800020)
chr6 (473-718)||(28487361-28487608)
chr6 (470-717)||(29755546-29755789)
chr6 (474-726)||(29671188-29671434)
chr6 (575-654)||(29741318-29741397)
chr6 (379-584)||(29704744-29704953)
chr6 (20-107)||(28484679-28484766)
chr6 (11-94)||(29715155-29715238)
chr6 (20-107)||(29797091-29797178)
chr6 (26-107)||(28500408-28500489)
chr6 (11-76)||(29708014-29708079)
chr6 (26-107)||(29812819-29812900)
[»] chr8 (1 HSPs)
chr8 (473-720)||(12592388-12592638)
[»] scaffold0012 (2 HSPs)
scaffold0012 (541-720)||(208618-208797)
scaffold0012 (298-367)||(235903-235972)
[»] chr1 (1 HSPs)
chr1 (537-715)||(5918229-5918407)


Alignment Details
Target: scaffold0007 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 10 - 728
Target Start/End: Complemental strand, 75838 - 75120
Alignment:
Q  10 cagaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaata 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75838 cagaacatgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaata 75739  T
Q  110 caaattatatttttctaccaaacatttnnnnnnnnntgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacaga 209  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75738 caaattatatttttctaccaaacatttaaaaaaaaatgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacaga 75639  T
Q  210 atatgagtgagtcacattaactatagatctggcaaagatgaggaatttttatggttttggttggttttcccaaaagatgaggaattctttgtttgggttg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75638 atatgagtgagtcacattaactatagatctggcaaagatgaggaatttttatggttttggttggttttcccaaaagatgaggaattctttgtttgggttg 75539  T
Q  310 attttataaaagactgaccgatgctctcttttacctgcattacgaaaccaagttacataaagattatacagtccagcctataattgtgaacacatggtaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75538 attttataaaagactgaccgatgctctcttttacctgcattacgaaaccaagttacataaagattatacagtccagcctataattgtgaacacatggtaa 75439  T
Q  410 aaactatcataaaataatgaaacaaattagcattctaaacttcaagaagaaagctttgttacaatttgcgtaaaatgaatgatatgcttacttcaacatc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75438 aaactatcataaaataatgaaacaaattagcattctaaacttcaagaagaaagctttgttacaatttgcgtaaaatgaatgatatgcttacttcaacatc 75339  T
Q  510 ccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaa 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75338 ccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaa 75239  T
Q  610 tggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagattt 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75238 tggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagattt 75139  T
Q  710 aaatgatacattttcagtc 728  Q
    |||||||||||||||||||    
T  75138 aaatgatacattttcagtc 75120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 414 - 707
Target Start/End: Complemental strand, 619164 - 618871
Alignment:
Q  414 tatcataaaataatgaaacaaattagcattctaaacttcaagaagaaagctttgttacaatttgcgtaaaatgaatgatatgcttacttcaacatcccga 513  Q
    ||||| ||||| || |||||||||| ||||||| ||| ||||||||||||||| | |||||||| |||||||||||||| | ||||||| |||||||||     
T  619164 tatcaaaaaattattaaacaaattaacattctacactacaagaagaaagctttatgacaatttgggtaaaatgaatgatgtacttactttaacatcccgg 619065  T
Q  514 gcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggg 613  Q
    | |||||||||||||||||| | ||||||||||  ||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  619064 gtgtaacacaatgttagcatcaatctctgggttactgaatcgaatatctttcatgttacttttctcttccaatacatggattccactatacatgaatggg 618965  T
Q  614 gatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagat 707  Q
     |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |  | | ||| ||||||||||||||    
T  618964 aatccaaagtcaacctctgcatgattccacttattttctaaaagtgctttgtccatattatcattgaagtacttcatttgcatatgaaaaagat 618871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 473 - 717
Target Start/End: Original strand, 29689073 - 29689317
Alignment:
Q  473 atttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctac 572  Q
    ||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||| | ||||||| |||||||||| ||||||||||||| |||    
T  29689073 atttgggtaaaatgaatgatatacttacttcaaaatcccgagtgtaacacaatgttagcatcattctctggattggtgaatctaatatccttcatgttac 29689172  T
Q  573 ttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagt 672  Q
    | ||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |    
T  29689173 tcttctctttcaatacatggattccactaaacatgaatgggaatccaaagtcaacctctgcatggttccatttattttctaaaagtgctttatccatatt 29689272  T
Q  673 atcgttgaatttttcccttttcatatgaaaaagatttaaatgata 717  Q
    | | ||||| | ||||  || ||||||||||||||  ||||||||    
T  29689273 accattgaagtattccacttgcatatgaaaaagatgcaaatgata 29689317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 479 - 720
Target Start/End: Original strand, 29718259 - 29718503
Alignment:
Q  479 gtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttct 578  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||| ||||||| |||| |    
T  29718259 gtaaaatgaatgatatacttacttcaacatcccgagtgtaacacaatgttagcatcattcgctgggttggtgaatcgaatatcctccatgctattttttt 29718358  T
Q  579 ctttcaatatatggattccactatacatgaatgggga---tccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatc 675  Q
    ||||||||| ||||| |||||||||||||||||  ||    ||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29718359 ctttcaatacatggactccactatacatgaatgcagagacaccaaaataaatctctgcatggttccacttattttctaaaagtgctttgtccatattatc 29718458  T
Q  676 gttgaatttttcccttttcatatgaaaaagatttaaatgatacat 720  Q
     ||||| || ||| ||| ||||||||||||||  |||||||||||    
T  29718459 attgaagttctccgtttgcatatgaaaaagatgcaaatgatacat 29718503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 525 - 720
Target Start/End: Original strand, 29767101 - 29767296
Alignment:
Q  525 tgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtc 624  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  29767101 tgttagcatcattctctgggttggtgaatcgaatatctttcatgctacttttctctttcaatacatggattccactaaacatgaatgggaatccaaagtc 29767200  T
Q  625 aagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 720  Q
    || ||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||| | |||| ||| ||||||||||||||  |||||||||||    
T  29767201 aacctctgcatggttccatttattttctaaaagtgccttgtccatattatcattgaagtattccatttgcatatgaaaaagatgcaaatgatacat 29767296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 539 - 719
Target Start/End: Complemental strand, 29472125 - 29471945
Alignment:
Q  539 tctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggt 638  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  29472125 tctgggttggtgaattgaatatccttcatgttacttttctttttcaatacatggattccactatacatgaatgggaacccaaagtcaacctctgcatggt 29472026  T
Q  639 tccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgataca 719  Q
    |||||||||||||||||||||||||||||||| |||  || ||||||||| ||| |||||||||||||| || ||||||||    
T  29472025 tccacttattttctaaaagtgctttgtccatattattattcaatttttccatttgcatatgaaaaagatgtagatgataca 29471945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 522 - 718
Target Start/End: Original strand, 29662668 - 29662863
Alignment:
Q  522 caatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaa 621  Q
    |||| ||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| || |  ||||||| |||||||    
T  29662668 caatattagcatcattctctgggttggtgaatcgaatatcattcatgttacttttctctttcaatacatggattccac-attctggaatgggaatccaaa 29662766  T
Q  622 gtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatac 718  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||  ||| |||||||||||||| ||||||||||    
T  29662767 gtcaacctctgcatggttccacttattttctaaaagtgctttgtccatatcatcattgaatttttcagtttgcatatgaaaaagatgtaaatgatac 29662863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 484 - 707
Target Start/End: Original strand, 29711646 - 29711864
Alignment:
Q  484 atgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttc 583  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||| | ||||     |||||||| |||| || |||||| ||||||||||||||    
T  29711646 atgaatgatatacttacttcaacatcccgagtgtaacacaatgttggcatcattctc-----tggtgaattgaatgtctttcatgttacttttctctttc 29711740  T
Q  584 aatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatt 683  Q
    |||| |||||||||||||| |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |    
T  29711741 aatacatggattccactattctggaaagggaatccaaagtcaacctctgcatggttccacttattttctaaaagtgctttgtctatattatcattgaaat 29711840  T
Q  684 tttcccttttcatatgaaaaagat 707  Q
    ||||| ||| || |||||||||||    
T  29711841 tttccatttgcaaatgaaaaagat 29711864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 473 - 718
Target Start/End: Original strand, 29799774 - 29800020
Alignment:
Q  473 atttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcat-tagtctctgggttggtgaatcgaatatccttcatgcta 571  Q
    ||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||  | || |||||| | |||||||||||||||||||| ||    
T  29799774 atttgggtaaaatgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgtta 29799873  T
Q  572 cttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatag 671  Q
    |||||  ||||||||| |||||||||||| |    ||||  | ||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||     
T  29799874 cttttagctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaaagtgatttatccatat 29799973  T
Q  672 tatcgttgaatttttcccttttcatatgaaaaagatttaaatgatac 718  Q
    |||| ||||| |||||| ||| |||||| |||||||  |||||||||    
T  29799974 tatcattgaagttttccgtttgcatatggaaaagatgcaaatgatac 29800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 473 - 718
Target Start/End: Original strand, 28487361 - 28487608
Alignment:
Q  473 atttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcat-tagtctctgggttggtgaatcgaatatccttcatgcta 571  Q
    ||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||  | || |||||| | |||||||||||||||||||| ||    
T  28487361 atttgggtaaaatgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgtta 28487460  T
Q  572 ctttt-ctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccata 670  Q
    |||||  |||||||||| |||||||||||| |    ||||  | ||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||    
T  28487461 cttttagtctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaaagtgatttatccata 28487560  T
Q  671 gtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatac 718  Q
     |||| ||||| |||||| ||| |||||| |||||||  |||||||||    
T  28487561 ttatcattgaagttttccgtttgcatatggaaaagatgcaaatgatac 28487608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 470 - 717
Target Start/End: Original strand, 29755546 - 29755789
Alignment:
Q  470 acaatttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgc 569  Q
    |||||||| || ||||||||||||| ||||||||| |   ||||| | |  ||||||||||||| | ||||||| |||||||||||||||||||||| |     
T  29755546 acaatttgggtcaaatgaatgatatacttacttcacc---ccgagtg-attacaatgttagcatcattctctggattggtgaatcgaatatccttcaagt 29755641  T
Q  570 tacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccat 669  Q
    || ||||||||||||||| |||||||||||| |  | ||||  | ||||||||  || ||| ||||||||||||||||||||| ||||||||||||||||    
T  29755642 taattttctctttcaatacatggattccacttttaaggaatttgaatccaaagagaacctccgcatggttccacttattttctgaaagtgctttgtccat 29755741  T
Q  670 agtatcgttgaatttttcccttttcatatgaaaaagatttaaatgata 717  Q
    | |||| ||||| |||||| ||| ||||||||||||||  ||||||||    
T  29755742 attatcattgaagttttccatttgcatatgaaaaagatgcaaatgata 29755789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 474 - 726
Target Start/End: Original strand, 29671188 - 29671434
Alignment:
Q  474 tttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctact 573  Q
    |||| |||||||||||||||| |||||||||||||||| || |||| | ||  | | |      |||||| |||||||||| ||||||||||||| ||||    
T  29671188 tttgggtaaaatgaatgatatacttacttcaacatccctagagtaaaataaaatcaac------ctctggattggtgaatctaatatccttcatgttact 29671281  T
Q  574 tttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagta 673  Q
    |||||||||| ||| ||| |||||||| | |  ||||||  ||||||| |||| |||||||||||||||| ||||||| |||||| |||| |||||| ||    
T  29671282 tttctctttcgatacatgaattccacttttctggaatggtaatccaaaatcaacctctgcatggttccacatattttcaaaaagtactttttccatatta 29671381  T
Q  674 tcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcag 726  Q
    || || || |||||| ||||||||||||||||||  ||||||||||| |||||    
T  29671382 tcattaaagttttccattttcatatgaaaaagatgcaaatgatacatattcag 29671434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 29741318 - 29741397
Alignment:
Q  575 ttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaa 654  Q
    ||||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  29741318 ttctctttcaatacatggattccgctatacatgaacgggaatccaaagtcaacctctgcatggttccacttattttctaa 29741397  T

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Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 379 - 584
Target Start/End: Original strand, 29704744 - 29704953
Alignment:
Q  379 agtccagcctataattgtgaacacatggtaaaaactatcataaaataatgaaacaaattagcattctaaacttcaagaagaaagctttgttacaatttgc 478  Q
    |||||| ||||||||||||||||||| | || | ||||||||||||| ||||||||||||   || || | | || |||| ||| ||| | ||||||| |    
T  29704744 agtccaacctataattgtgaacacatagaaagatctatcataaaatagtgaaacaaattaattttttacattacaggaagcaagatttatgacaattt-c 29704842  T
Q  479 gtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaat-gttagca----ttagtctctgggttggtgaatcgaatatccttcatgctact 573  Q
    |||||||||||||||| ||||||||||||||  |   |||||||||| |||||||    | | | ||||||||  |||||| ||||||||||||| ||||    
T  29704843 gtaaaatgaatgatatacttacttcaacatcttggctgtaacacaatggttagcatcgttaattttctgggttactgaatcaaatatccttcatgttact 29704942  T
Q  574 tttctctttca 584  Q
    |||||||||||    
T  29704943 tttctctttca 29704953  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 28484679 - 28484766
Alignment:
Q  20 gagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa 107  Q
    ||||||||||| |||||||||||  ||| || |||||||| || |||||||| || || | ||||||||||||||  |||||||||||    
T  28484679 gagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa 28484766  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 29715155 - 29715238
Alignment:
Q  11 agaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaa 94  Q
    ||||| || ||||||||||| |||||||||||  ||| || |||||||| || |||||||| || |||| ||||||||||||||    
T  29715155 agaacatgggagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttattatcgtcaatctagaaagaaa 29715238  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 29797091 - 29797178
Alignment:
Q  20 gagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa 107  Q
    ||||||||||| |||||||||||  ||| || |||||||| || |||||||| || || | ||||||||||||||  |||||||||||    
T  29797091 gagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa 29797178  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 28500408 - 28500489
Alignment:
Q  26 agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa 107  Q
    ||||| |||||||||||  ||| || || ||||| ||||||||||||| ||||| |||||||||||| |  |||||||||||    
T  28500408 agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa 28500489  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 29708014 - 29708079
Alignment:
Q  11 agaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgt 76  Q
    ||||| |||||||||| ||| |||||||||||  |||||| |||||||| ||||||| ||||||||    
T  29708014 agaacatgtgagaatactaagaaaatacaaaatgaataaagtgcagttagtaaatccatttcttgt 29708079  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 29812819 - 29812900
Alignment:
Q  26 agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa 107  Q
    ||||| |||||||||||  ||| || || ||||| ||||||||||||| ||||| |||||||||||| |  |||||||||||    
T  29812819 agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa 29812900  T

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Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 473 - 720
Target Start/End: Complemental strand, 12592638 - 12592388
Alignment:
Q  473 atttgcgtaaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctac 572  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||| | || |||||||||||||||||||||||| |||| |      
T  12592638 atttgggtaaaatgaatgatatacttactttaacattccgagtgtaacacaatgttagcatcactcgctgggttggtgaatcgaatatcctccatgttgt 12592539  T
Q  573 ttttctctttcaatatatggattccactatacatgaatgggga---tccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccat 669  Q
    |||| |||||||||| |||||||||||||||||||||||  ||    ||||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  12592538 ttttatctttcaatacatggattccactatacatgaatgcagagacaccaaaataaacctctgcatggttccacttattttctaaaagtgctttgtccat 12592439  T
Q  670 agtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 720  Q
    | |||| ||||| || ||| ||| ||||||||||||||  |||||||||||    
T  12592438 attatcattgaagttctccatttgcatatgaaaaagatgcaaatgatacat 12592388  T

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Target: scaffold0012 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 541 - 720
Target Start/End: Original strand, 208618 - 208797
Alignment:
Q  541 tgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttc 640  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| | || ||||| |  |||||| |||||||||||||| |||    
T  208618 tgggttgatgaatcgaatatcgttcatgctacttctctctttcaatacatggattccactttccaggaatgagagtccaaaatcaagctctgcatgattc 208717  T
Q  641 cacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 720  Q
    |||||||||||| | ||||||||||||||| | || ||||| |||||| ||| ||||||||||||||  |||||||||||    
T  208718 cacttattttctgagagtgctttgtccatattttcattgaagttttccatttgcatatgaaaaagatgcaaatgatacat 208797  T

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Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 235903 - 235972
Alignment:
Q  298 ttgtttgggttgattttataaaagactgaccgatgctctcttttacctgcattacgaaaccaagttacat 367  Q
    |||||||| ||| ||||  |||||| ||||| |||||||||| ||||||||||  ||| |||||||||||    
T  235903 ttgtttggattggttttccaaaagagtgaccaatgctctcttctacctgcattgagaagccaagttacat 235972  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 715
Target Start/End: Original strand, 5918229 - 5918407
Alignment:
Q  537 tctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatg 636  Q
    ||||||| ||||||||| | |||||| |||| ||||||||||||||||| | |||||||||||| |    ||||    | ||||||||||   |  ||||    
T  5918229 tctctggattggtgaattggatatccatcatactacttttctctttcaacacatggattccacttttatggaattcaaacccaaagtcaactaccacatg 5918328  T
Q  637 gttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatga 715  Q
    |||||||| ||||||||||||||||   |||| |  ||| |||||||||||  ||| ||||||||||| || |||||||    
T  5918329 gttccactcattttctaaaagtgctgcatccacatcatcattgaatttttctatttgcatatgaaaaatatgtaaatga 5918407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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