View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13791_low_10 (Length: 410)

Name: NF13791_low_10
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13791_low_10
NF13791_low_10
[»] chr6 (4 HSPs)
chr6 (221-401)||(13123336-13123513)
chr6 (1-130)||(13115476-13115604)
chr6 (160-204)||(13123295-13123339)
chr6 (159-215)||(20891677-20891733)
[»] scaffold0338 (1 HSPs)
scaffold0338 (159-212)||(18667-18720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (166-218)||(71415-71468)
[»] chr8 (1 HSPs)
chr8 (159-212)||(15061947-15062000)
[»] chr4 (1 HSPs)
chr4 (358-402)||(24474409-24474453)
[»] scaffold0171 (1 HSPs)
scaffold0171 (221-259)||(2732-2770)
[»] chr2 (1 HSPs)
chr2 (158-218)||(16592321-16592382)
[»] chr3 (1 HSPs)
chr3 (221-315)||(2278284-2278379)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 221 - 401
Target Start/End: Original strand, 13123336 - 13123513
Alignment:
Q  221 gagtctagttaggctctgatttgggagtgtcggaacttttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtatgtgat 320  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  13123336 gagtctagttaggctctgatatgggagtgtcgggacttttgttttatgtcgtttatttgtttatggatttatctgctgagactattattatgtatgtg-- 13123433  T
Q  321 cagacctaattatgtatgatgattattctgctgcaagttttatgaaaaccaacttatgcataatttgagaatatgatgatg 401  Q
     ||||||||||||||||||||||| ||| ||||||||| | ||||||||||| ||||||||  ||||||||||||||||||    
T  13123434 -agacctaattatgtatgatgatttttccgctgcaagtataatgaaaaccaatttatgcatgttttgagaatatgatgatg 13123513  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13115476 - 13115604
Alignment:
Q  1 tgtttgtgtgacagattgag-tagatacgaataattcaatcatgtcctgaggagccatcaagtagttcaaccaatttataggcatggaaggatatattgc 99  Q
    ||||||| |||||||||||  |||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13115476 tgtttgtttgacagattgatatagatacgaataattcaatcttgtccttgggagccatcaagtagttcaaccaatttataggcatggaaggatatattgc 13115575  T
Q  100 aaagccacatattctatctcaaatgtggatg 130  Q
    ||||||||||||  | |||||||||||||||    
T  13115576 aaagccacatat--tttctcaaatgtggatg 13115604  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 13123295 - 13123339
Alignment:
Q  160 attgatttcttattgcttgtgagggcttgaggattaacttggagt 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  13123295 attgatttcttattgcttgtgagtgcttgaggattaacttggagt 13123339  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 20891733 - 20891677
Alignment:
Q  159 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctcttatc 215  Q
    ||||||||||||||||||||||||  || ||||| || ||||||| |||||||||||    
T  20891733 gattgatttcttattgcttgtgagtactcgaggactagcttggagctacctcttatc 20891677  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18667 - 18720
Alignment:
Q  159 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 212  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  18667 gattgagttcttatttcttgtgagtgcttgaggattagcttggagttacctctt 18720  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 71415 - 71468
Alignment:
Q  166 ttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 218  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  71415 ttcttattgcttgtgagtgcttgaggattagcttggagctacctccttatcttt 71468  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 15062000 - 15061947
Alignment:
Q  159 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 212  Q
    |||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||    
T  15062000 gattgagttcctattgcttgtgagtgcttgaggattagcttggagctacctctt 15061947  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 24474409 - 24474453
Alignment:
Q  358 ttttatgaaaaccaacttatgcataatttgagaatatgatgatgt 402  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||    
T  24474409 ttttatgaaaaccaatttatgcataatttgagaaaatgaagatgt 24474453  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 2770 - 2732
Alignment:
Q  221 gagtctagttaggctctgatttgggagtgtcggaacttt 259  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  2770 gagtctagttaggctctgatttaggagtgtcgggacttt 2732  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 16592321 - 16592382
Alignment:
Q  158 ggattgatttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 218  Q
    ||||||| ||||||||||| ||||| |||||||| |||| |||||| ||||| |||||||||    
T  16592321 ggattgagttcttattgctagtgagtgcttgagggttaatttggagctacctccttatcttt 16592382  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 2278379 - 2278284
Alignment:
Q  221 gagtctagttaggctctgatttgggagtgtcggaact---tttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtat 315  Q
    |||||||||||||||||||||| |||||||| | |||   ||| |||| |||| ||||| || | |||||||||  |||||||||||| | |||||||    
T  2278379 gagtctagttaggctctgatttaggagtgtcaggactttgtttcttttgtgtcttttatctgatgatggattta--tgctgagactatgactatgtat 2278284  T

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