View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_11 (Length: 380)
Name: NF13791_low_11
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 46416326 - 46415963
Alignment:
| Q |
1 |
gaagatatattcatgaataagaaactaattataatgacaagctttctttcagatttctggatagatatatcatgtagcttatttctttattactcatgca |
100 |
Q |
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| T |
46416326 |
gaagatatattcataaataagaaactaattataatgacaagctttctttcagatttctggatagatatatcatgtagcttatttctttattactcatgca |
46416227 |
T |
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| Q |
101 |
ggaatttgccatcacagcccattattttcagaggtcattcagatggaatatccagtttctccatttggggccaagatgttatttcaatttcccggaatag |
200 |
Q |
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| T |
46416226 |
ggaatttgccatcacagcccattattttcagaggtcattcagatggaatatccagtttctccatttggggccaagatgttatttcaatttcccggaatag |
46416127 |
T |
|
| Q |
201 |
gattgggcttctttccttgtctaaatctgccattgaaacggtatgcttctcattttttaggctcacacccacgtagaatgtgaatttctttttcctttgg |
300 |
Q |
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| T |
46416126 |
gattgggcttctttccttgtctaaatctgccattgaaacggtatgcttctcattttttaggctcacacccacgtagaatgtgaatttctttttcctttgg |
46416027 |
T |
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| Q |
301 |
ttgttcaaatagattccactccagtaataaatgatgggtatactgaaatcgtttatagataact |
364 |
Q |
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| T |
46416026 |
ttgttcaaatagattccactccagtaataaatgatgggtatactgaaatcgtttatagataact |
46415963 |
T |
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