View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_12 (Length: 379)
Name: NF13791_low_12
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_12 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 6190992 - 6191367
Alignment:
| Q |
1 |
caacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaag |
100 |
Q |
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| T |
6190992 |
caacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgttgtagctctacgtcatagagaatggactctag |
6191091 |
T |
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| Q |
101 |
tgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttccc |
200 |
Q |
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| T |
6191092 |
tgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttacttttggcggagactctggacttccc |
6191191 |
T |
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| Q |
201 |
agcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtgg |
300 |
Q |
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| T |
6191192 |
agcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtgg |
6191291 |
T |
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| Q |
301 |
tgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtctttccc |
379 |
Q |
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| T |
6191292 |
tgtcgggaacaataacctg---tccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtctttccc |
6191367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 6183992 - 6184231
Alignment:
| Q |
9 |
ggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaagtgaatttt |
108 |
Q |
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| T |
6183992 |
ggagaaacgttttcatgagatgcttgttttatgtattcaaaagacatatgtaattgctgctgtagctcgacatcactgagaatggactcaagtgaatttt |
6184091 |
T |
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| Q |
109 |
caaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttcccagcaggat |
208 |
Q |
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| T |
6184092 |
ttaataggctttcaaggttatgcaaggcttctcttacagcaacatcg---cttgtggaacaggttgcttttggcgaggactctggacttcccaacaggat |
6184188 |
T |
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| Q |
209 |
gctctcaagttcagcaaaagggtcctcatctgattcatcttca |
251 |
Q |
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| T |
6184189 |
gctatcaagttcagcaaaagggtcatcatctgatccatcttca |
6184231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 6184282 - 6184372
Alignment:
| Q |
284 |
acttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtct |
374 |
Q |
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| T |
6184282 |
acttatcagatcattggtttcaggaacaatgatttgttctccttgtatgtttggtttttcttctggattcttggtctcatcacaattgtct |
6184372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 37454613 - 37454249
Alignment:
| Q |
1 |
caacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaag |
100 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||| |||| ||||||||||| ||| |||||||||||||||| |
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| T |
37454613 |
caacatttggagaaactttttcatgggttgcttgttttatgcattccaaagacgtgcgtaactgtttttgtagctctacatcacagagaatggactcaag |
37454514 |
T |
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| Q |
101 |
tgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttccc |
200 |
Q |
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||| ||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
37454513 |
tgatttttccaatagacattcaaggttatgcaaagcttctcttacagcaacatcatcgcttgtggaacaagttgcttttggcgaggactctggacttccc |
37454414 |
T |
|
| Q |
201 |
agcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtgg |
300 |
Q |
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|||||| ||||||| ||||| |||| |||||| || ||| ||||||| | || || ||||||| |||| |||||||| ||||||| | || ||| |
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| T |
37454413 |
ttcaggatcctctcaacttcagaaaaaatgtcctcgtcagatccatcttcggatttgctaagatccaccggtgccttttctttgcttattgaaccattgg |
37454314 |
T |
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| Q |
301 |
tgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatca |
365 |
Q |
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|||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
37454313 |
tgtcaggaacaataacttgtcctccttgtatatttgcttttccttttgattgcttggtctcatca |
37454249 |
T |
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