View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13791_low_13 (Length: 368)

Name: NF13791_low_13
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13791_low_13
NF13791_low_13
[»] chr6 (5 HSPs)
chr6 (1-63)||(27163791-27163853)
chr6 (182-253)||(27163645-27163716)
chr6 (61-107)||(27163709-27163755)
chr6 (302-349)||(27163493-27163540)
chr6 (22-57)||(27163958-27163993)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27163853 - 27163791
Alignment:
Q  1 ctgttacttgagctgcaagcaacattcttgaataatccacaatacttggaacactcatgtttc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27163853 ctgttacttgagctgcaagcaacattcttgaataatccacaatacttggaacactcatgtttc 27163791  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 27163716 - 27163645
Alignment:
Q  182 taggcttgacaaaactctgaaattgtaagcacacaacaagaggactattgtagacaaggtagggttcacaac 253  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  27163716 taggattgacaaaactctgaaattgcaagcacacaacaagaggactattgtagacaaggtagggttgacaac 27163645  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 27163755 - 27163709
Alignment:
Q  61 ttcacaaggagtaacatagtgtccctcacttctcctcactaggattg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27163755 ttcacaaggagtaacatagtgtccctcacttctcctcactaggattg 27163709  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 27163540 - 27163493
Alignment:
Q  302 aatgcaataacacaatagcaaaagtataccttggtacttggtacactc 349  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  27163540 aatgcaataacacaatagcaaaagtataccatggtacttggtacactc 27163493  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 27163993 - 27163958
Alignment:
Q  22 acattcttgaataatccacaatacttggaacactca 57  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27163993 acattcttgaataatccacaatacttggaactctca 27163958  T

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