View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_14 (Length: 346)
Name: NF13791_low_14
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 96 - 332
Target Start/End: Original strand, 24378327 - 24378563
Alignment:
| Q |
96 |
aatcatcaaagaaattgttgcttccattgttgttgaatttctcattactattctcacatcaatcatcagcctctgcgaattgttctctatttcagcttcc |
195 |
Q |
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||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
24378327 |
aatcatcaatgaaactgttgcttccattgctgttgaatttctcattactattctcacatcaatcatcaccctctgcgaattgttctctgtttcagcttcc |
24378426 |
T |
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| Q |
196 |
atcatcaatcaagattgannnnnnnncccttttcaaaacctagattaacatgagacaacttttgtgttttttgattttaaattgatttgttgtgttgaaa |
295 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
24378427 |
atcatcaatcaagattgaatttttttcccttttcaaaccctagattaacatgagacaacttttgtgtttttcgatttcaaattgatttgttgtattgaaa |
24378526 |
T |
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| Q |
296 |
aactcgaagaaggacaagaagaaactggggttgttga |
332 |
Q |
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||||||||||| ||||||||||| || ||||||||| |
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| T |
24378527 |
cactcgaagaagaacaagaagaaaatgaggttgttga |
24378563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24378212 - 24378273
Alignment:
| Q |
1 |
gtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccattaagcccag |
62 |
Q |
| |
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||||||| |||| ||||||||||||| ||||||| |||||| |||||||||||||||||||| |
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| T |
24378212 |
gtttccggcgtagagagaagaaggaaaagattttcgattgtcgttgcttccattaagcccag |
24378273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 20102544 - 20102323
Alignment:
| Q |
96 |
aatcatcaaagaaattgttgcttccattgttgttgaatttctcattactattctcacatcaatcatcagcctctgcgaattgttctctatttcagcttcc |
195 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
20102544 |
aatcatcaaagaaactgttgcttccattgctgttgaatttctcattattattctcacaccaatcatcaccctctgtgaattgttctctgtttcagcttcc |
20102445 |
T |
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| Q |
196 |
atcatcaatcaagattgannnnnnnncccttttcaaaacctagattaacatgagacaacttttgtgttttttgattttaaattgatttgttgtgttgaaa |
295 |
Q |
| |
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|||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
20102444 |
atcatcaatcaatattga-attttttcccttttcaaaccctagattaacatgagacaacttttgtgtttttcgattttaaattgatttgttgtattgaaa |
20102346 |
T |
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| Q |
296 |
aactcgaagaaggacaagaagaa |
318 |
Q |
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||||||||||| | |||||||| |
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| T |
20102345 |
cactcgaagaagaagaagaagaa |
20102323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20102643 - 20102583
Alignment:
| Q |
1 |
gtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccattaagccca |
61 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
20102643 |
gtttccggcgtagagagaagaaggaagagatttttgattgatgttgcttccattaaaccca |
20102583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 4156494 - 4156583
Alignment:
| Q |
110 |
ttgttgcttccattgttgttgaatttctcattactattctcacatcaatcatcagcc-tctgcgaattgttctctatttcagcttccatc |
198 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||| |||| | ||||||| || |||| ||||| |||||| ||||||||||||| |
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| T |
4156494 |
ttgttacttccattgttgttgaaattttcattactattttcacccccatcatcacccttctgggaattattctctgcttcagcttccatc |
4156583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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