View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_2 (Length: 694)
Name: NF13791_low_2
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 76 - 682
Target Start/End: Original strand, 52583650 - 52584273
Alignment:
| Q |
76 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
52583749 |
T |
|
| Q |
176 |
atttatacataaacacttatttgataaactctagcacttaatt------------cgaatactactcaagtatgatgcaattttctttattagtactagt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583750 |
atttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagt |
52583849 |
T |
|
| Q |
264 |
gaacataaaatcaggaag-----agaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaata |
358 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583850 |
gaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaata |
52583949 |
T |
|
| Q |
359 |
aatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatttttcattcat |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583950 |
aatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatttttcattcat |
52584049 |
T |
|
| Q |
459 |
tctatcaatcacatttccaccaacatcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacggaaccaaaactctca |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52584050 |
tctatcaatcacatttccaccaacatcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacagaaccaaaactctca |
52584149 |
T |
|
| Q |
559 |
cttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcac |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584150 |
cttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcac |
52584249 |
T |
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| Q |
659 |
ttgttagattctccaccacaggtt |
682 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
52584250 |
tagttagattctccaccacaggtt |
52584273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52583375 - 52583443
Alignment:
| Q |
1 |
tgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
69 |
Q |
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| T |
52583375 |
tgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
52583443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 19395153 - 19395216
Alignment:
| Q |
103 |
aattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttt |
167 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||||| | |||| |||||||||||||||| |||| |
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| T |
19395153 |
aattctccaagatagctaatgaaaacattt-tatagcttatacaaaaacaatttgattttcgttt |
19395216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
160 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
202 |
Q |
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||||||| || |||||| ||||||||||||||||||||||||| |
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| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
160 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||| |
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|
| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
159 |
tttttgttttaaaaataatttatacataaacacttat |
195 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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