View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_20 (Length: 292)
Name: NF13791_low_20
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 39028013 - 39027739
Alignment:
| Q |
19 |
aaaggccactgtaaagttctgtta-cactttcatgcctatacttttgagggcagaaaaacacattatgggaagttctcgaataatggtattccagtcaca |
117 |
Q |
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| T |
39028013 |
aaaggccactgtaaagttctgttaacactttcatgcctatacttttgagggcagaaaaacacattatgggaagttctcgaataatggtattccagtcaca |
39027914 |
T |
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| Q |
118 |
gcatatacatcggccagagtttattgatccatcgtatagcaacacacaaaaatagcatcgaatatgacaagcaggctgcaaagggtattgtccttattta |
217 |
Q |
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| T |
39027913 |
gcatatacatcggccagagtttattgatccatcgtatagcaacacacaaaaatagcatcgaatatgacaagcaggctgtaaagggtattgtccttattta |
39027814 |
T |
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| Q |
218 |
ttaactagatagtgaaaattgatgtgaagaaaaaatataatacaaactcagcctacaaagctgcatgtcagccat |
292 |
Q |
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| T |
39027813 |
ttaactagatagtgaaaattgatgtgaaaaaaaaatataatacaaactcagcctacaaagctgcatgtcagccat |
39027739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 39040880 - 39040739
Alignment:
| Q |
49 |
catgcctatacttttgagggcagaaaaacacattatgggaagttctcgaataatggtattccagtcacagcatatacatcggccagagtttattgatcca |
148 |
Q |
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| T |
39040880 |
catgcctatacttttgagggaagaaaaacacattatgg-aagttctctactaacggtattccaggcatggcgtatacataggccagagtttattgatcca |
39040782 |
T |
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| Q |
149 |
tcgtatagcaacacacaaaaatagcatcgaatatgacaagcag |
191 |
Q |
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| T |
39040781 |
tcttattgcggcacacaaaaatagcatcgaatatgataagcag |
39040739 |
T |
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