View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_21 (Length: 286)
Name: NF13791_low_21
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 13033209 - 13033076
Alignment:
| Q |
37 |
ttgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcac |
136 |
Q |
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| T |
13033209 |
ttgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgaaaaaaatacatatattcagtctcac |
13033110 |
T |
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| Q |
137 |
acccattttctctaggaagtgacaagattaggtt |
170 |
Q |
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| T |
13033109 |
acccattttctctaggaagtgacaagattaggtt |
13033076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 15214904 - 15215036
Alignment:
| Q |
38 |
tgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcaca |
137 |
Q |
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| T |
15214904 |
tgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaatccatgaaaaaaatacatatattgagtctcaca |
15215003 |
T |
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| Q |
138 |
cccattttctctaggaagtgacaagattaggtt |
170 |
Q |
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| T |
15215004 |
cccattttctctaggaagtgacaagattaggtt |
15215036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 15066537 - 15066407
Alignment:
| Q |
40 |
tctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcacacc |
139 |
Q |
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| T |
15066537 |
tctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaatccatgataaaaataaaaatattgagtatcacatc |
15066438 |
T |
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| Q |
140 |
cattttctctaggaagtgacaagattaggtt |
170 |
Q |
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| T |
15066437 |
cattttctctaggaagagacaagattaggtt |
15066407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 13033039 - 13032987
Alignment:
| Q |
216 |
tgttgaagccattggaggattttgttcctgaccagctgttatagcacgatacc |
268 |
Q |
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| T |
13033039 |
tgttgaagccattggaggattttgttcctgaccagctgttatagcacgatacc |
13032987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 15066387 - 15066343
Alignment:
| Q |
169 |
ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct |
213 |
Q |
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| T |
15066387 |
ttgttttcttcgctaattgtttcttgtccatcccttgattggtct |
15066343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 15076340 - 15076296
Alignment:
| Q |
169 |
ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct |
213 |
Q |
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| T |
15076340 |
ttgttttcttcgctaattgtttcttgtccatcccttgattggtct |
15076296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 15052182 - 15052138
Alignment:
| Q |
169 |
ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct |
213 |
Q |
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| T |
15052182 |
ttgttttcttcgctaattttttcttgtccatcccttgattggtct |
15052138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 15076394 - 15076360
Alignment:
| Q |
136 |
cacccattttctctaggaagtgacaagattaggtt |
170 |
Q |
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| T |
15076394 |
cacccattttctttaggaagtgacaagattaggtt |
15076360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 15215056 - 15215100
Alignment:
| Q |
169 |
ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct |
213 |
Q |
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| T |
15215056 |
ttgtttactttgctagttgtttcttgtccatcccttgattggtct |
15215100 |
T |
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