View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_22 (Length: 283)
Name: NF13791_low_22
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 35667782 - 35667509
Alignment:
| Q |
1 |
actctcatccttgaaatttatttatatatcaagtcatattatttttctataaagtctaatgtatttgatacaaaatttagaccaaaaacattttacattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
35667782 |
actctcatccttgaaatttatttatatatcaagtcatattatttttctataaagtctaatgtatttgatacaaaatttagaacaaaaatattttacattt |
35667683 |
T |
|
| Q |
101 |
gaatatcaaaatagtgagcaacgatcctgatctgtaagaaaaattgtgtgttttagtttgatttttaagagagagaaaaatgcacgactctttgcttgaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35667682 |
gaatatcaaaatagtgagtaacgatcctgatctgtaagaaaaattgtgggttttagtttgatttttaagagagagaaaaatgcacgactctttgcttgaa |
35667583 |
T |
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| Q |
201 |
catgatcggttctataagctcgtacaattgtatcctctatttataaggagagcataagcatgtcggagtattat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35667582 |
catgatcggttctataagctcgtacaattgtatcctctatttataaggagagcataagcatgttggagtattat |
35667509 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 32052439 - 32052391
Alignment:
| Q |
51 |
aaagtctaatgtatttgatacaaaatttagaccaaaaacattttacattt |
100 |
Q |
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|||||| |||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
32052439 |
aaagtcaaatgtatttgat-ctaaatttagaccaaatacattttacattt |
32052391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 33653218 - 33653259
Alignment:
| Q |
52 |
aagtctaatgtatttgatacaaaatttagaccaaaaacattt |
93 |
Q |
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|||||||||||||||| | |||||||||||||||| |||||| |
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| T |
33653218 |
aagtctaatgtatttggtccaaaatttagaccaaacacattt |
33653259 |
T |
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