View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_23 (Length: 282)
Name: NF13791_low_23
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 24278773 - 24279021
Alignment:
| Q |
16 |
aacctgtgtatacggggataaataacgctaaacgacttcaaaacccatggggtggattcagcttcaagtttcctagccgatgagatttgctaataacgtt |
115 |
Q |
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| T |
24278773 |
aacctgtgtatacggggataaataacgctaaacgacttcaaaacccatggggtggatttagcttcaagtttcctagccgatgagatttgctaataacgtt |
24278872 |
T |
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| Q |
116 |
ggaacatttatacctgagtggtttagatgcccgttgtccagaaacattgagcagagaaaatgatattttaacaactttcaatctaacctgacaaattaac |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||| | |
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| T |
24278873 |
ggaacatttatacctgagtggtttagatgcctgttgtccagaaacattgagcagagcaaatgatattttaataactttcattcactcctgacaaattagc |
24278972 |
T |
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| Q |
216 |
aataatcgagtctcgtgatatcagaggtgcctcatgtgcatgttgcatt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24278973 |
aataatcgagtctcgtgatatcagaggtgcctcatgtgcatgttgcatt |
24279021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 30981260 - 30981370
Alignment:
| Q |
16 |
aacctgtgtatacggggataaataacgctaaacgacttcaaaacccatggggtggattcagcttcaagtttcctagccgatgagatttgctaataacgtt |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30981260 |
aacctgtgtacacggggataaataacgctaaacgacttcaaaacccatggggtggattcagcttcaagtttcctagccgatgagatttgctaataacggt |
30981359 |
T |
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| Q |
116 |
ggaacatttat |
126 |
Q |
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| T |
30981360 |
gtaacatttat |
30981370 |
T |
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