View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_24 (Length: 262)
Name: NF13791_low_24
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 34683334 - 34683562
Alignment:
| Q |
15 |
gagatgaataatgcagccctagagcttcagaatttattaaaatcttatccaaacacacnnnnnnntgcaaaagatggtgatgcaaaactcgaaatcccaa |
114 |
Q |
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| T |
34683334 |
gagatgaataatgcagccctagagcttcagaatttattaaaatcttatccaaacacacaaaaaaatgcaaaagatggtgatgcaaaactcgaaatcccaa |
34683433 |
T |
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| Q |
115 |
taatagaattaattcaagtggtcacagttgtttctttgcttagtgaaattgtagctcgtgtggaagacattgtgaaatgtgttgaagaattatcagattt |
214 |
Q |
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| T |
34683434 |
taatagaattaattcaagtggtcacagttgtttctttgcttagtgaaattgtagctcgtgtagaagacattgtgaaatgtgttgaagaattatcagattt |
34683533 |
T |
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| Q |
215 |
agctaagtttaaaccagaaatgtccaaat |
243 |
Q |
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| T |
34683534 |
agctaagtttaaaccagaaatgtccaaat |
34683562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 34699642 - 34699791
Alignment:
| Q |
89 |
tggtgatgcaaaactcgaaatcccaataatagaattaattcaagtggtcacagttgtttctttgcttagtgaaattgtagctcgtgtggaagacattgtg |
188 |
Q |
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||||||||||||| | |||||||||||||| ||| |||||||||||||||| || |||||||||||| ||||| |||||| |||||||||||||||||| |
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| T |
34699642 |
tggtgatgcaaaaatggaaatcccaataatggaagtaattcaagtggtcacggtaatttctttgcttattgaaactgtagcacgtgtggaagacattgtg |
34699741 |
T |
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| Q |
189 |
aaatgtgttgaagaattatcagatttagctaagtttaaaccagaaatgtc |
238 |
Q |
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| T |
34699742 |
aaaagtgttgaagaactatcaaaattagctaaattcaaaccagaaatgtc |
34699791 |
T |
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