View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_25 (Length: 252)
Name: NF13791_low_25
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 24377963 - 24378196
Alignment:
| Q |
19 |
acactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatg |
118 |
Q |
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| T |
24377963 |
acactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtg |
24378062 |
T |
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| Q |
119 |
tcacaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgc |
218 |
Q |
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| T |
24378063 |
tcgcaaatccaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgc |
24378162 |
T |
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| Q |
219 |
gtggtagcagcggtggtgctagcggtgttgttac |
252 |
Q |
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| T |
24378163 |
gtggtggcagcggtggtgctagcggtgttgttac |
24378196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 20102875 - 20102651
Alignment:
| Q |
13 |
cacagaacactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaa |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20102875 |
cacaaaacactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaa |
20102776 |
T |
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| Q |
113 |
cgaatgtcacaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaa |
212 |
Q |
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| T |
20102775 |
agggtgtcgcaaatacaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaa |
20102676 |
T |
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| Q |
213 |
atctgcgtggtagcagcggtggtgc |
237 |
Q |
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| T |
20102675 |
atctgcgaggtagcagcggtggtgc |
20102651 |
T |
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