View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_27 (Length: 245)
Name: NF13791_low_27
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 46416572 - 46416436
Alignment:
| Q |
5 |
attatacttgttcctatcttatcaccctttatgccatataaacctgctgggggttataaactccgcagtaagaatgtttttacaagatatagatgcatgc |
104 |
Q |
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| T |
46416572 |
attatacttgttcctatcttatcaccctttatgccatataaacctgctgggggttataaactccgcagtaagaatgtttttacaagatatagatgcatgc |
46416473 |
T |
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| Q |
105 |
aattgcactgtagggaattctttaatttcttagtaat |
141 |
Q |
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| T |
46416472 |
aattgcactgtagggaattctttaatttcttagtaat |
46416436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 46416406 - 46416324
Alignment:
| Q |
163 |
cttgtttaacctgcactcttgtatgttttcatacatttgagtcctctacagtcttcttgatatacaacacatgtttatttgaa |
245 |
Q |
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| T |
46416406 |
cttgtttaacctgcactcttgtatgttttcatacatttgagtcctctacaatcttcttgatatacaacacatgtttatttgaa |
46416324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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