View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_30 (Length: 236)
Name: NF13791_low_30
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 8188465 - 8188645
Alignment:
| Q |
45 |
tttccatccgtgcttgaagccttgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctgatgctaaagg |
144 |
Q |
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| T |
8188465 |
tttccatccgtgcttgaagccctgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctaatgctaaagg |
8188564 |
T |
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| Q |
145 |
aatctgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgtctgtgctcc |
225 |
Q |
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| T |
8188565 |
aatatgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccagattctgtctgtgctcc |
8188645 |
T |
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Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 42346445 - 42346644
Alignment:
| Q |
19 |
agaggttcaagggatccactt--cagtctttccatccgtgcttgaagccttgacaaagccttttcatccatgggatgtccgccaccttacaaagtattct |
116 |
Q |
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| T |
42346445 |
agagggtcaagggatccacttttcagccgttccatccgtgcttgaagccctgacaaagctttttcatctacaggatgtaccccaccttgtaaagtatttt |
42346544 |
T |
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| Q |
117 |
cagctccaacatgttctgatgctaaaggaatctgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgt |
216 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||| |||| ||||||| |
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| T |
42346545 |
cagctccaacatgttctgatgcaagaggaatctgactatgaggaagtccatggttaaagttatcgttaacacttgtcaatggcctagtaccagattctgt |
42346644 |
T |
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