View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_31 (Length: 227)
Name: NF13791_low_31
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 33888785 - 33888586
Alignment:
| Q |
18 |
cataaaacaatggaaccttgtaaaaattaatgcgattactgaaaacaagattagtaatttgatagaaaatagataacacataaataaaataggagttaga |
117 |
Q |
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| T |
33888785 |
cataaaacaatggaaccttgtaaaaattaatgcgattaccgaaaacaagattagtaatttgatagaaaatagataacacataaataaaataggagttaga |
33888686 |
T |
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| Q |
118 |
attttcactctgtatttttatatttattgtcacatgacatgtatgtttgagatggctcatatttaatacatgaataatgaaaaagatgcattgatgatgt |
217 |
Q |
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| T |
33888685 |
atttacactctgtatttctatattcattgtcacatgacatgtatgtctgagatgactcatatttaatacatgaataatgaagaagatgcattggtgatgt |
33888586 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 37933507 - 37933561
Alignment:
| Q |
67 |
attagtaatttgatagaaaatagataacacataaataaaataggagttagaattt |
121 |
Q |
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| T |
37933507 |
attagttatttgatagaaaatagataatacataaatgtaataggggttaaaattt |
37933561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 28401311 - 28401339
Alignment:
| Q |
176 |
atatttaatacatgaataatgaaaaagat |
204 |
Q |
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| T |
28401311 |
atatttaatacatgaataatgaaaaagat |
28401339 |
T |
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