View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_4 (Length: 560)
Name: NF13791_low_4
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 31141552 - 31142092
Alignment:
| Q |
11 |
tctttgcatgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatcctactattattatcattattc |
110 |
Q |
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| T |
31141552 |
tcttttcatgactctatctgtggattagtcaacacattgctcgatactacgccatatcttgtgtcgttttgattttgtcctactattattatcattattc |
31141651 |
T |
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| Q |
111 |
tcgcgtcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgcccatttgttatatatacgatcaagagcatatc |
210 |
Q |
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| T |
31141652 |
tcgcttcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgcccatttgttatctatacgatcaagagcatacc |
31141751 |
T |
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| Q |
211 |
atacaagagtgataagagggaactttattagttgaagcatgaatatctttcctaacattttgaaatatgcctttgtttctgttccgccaaatctctcaga |
310 |
Q |
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| T |
31141752 |
gtacaagagtgataagagagaactttattagttgaagcatgaatatctttcctaacattttgaaatatgtctttgtttctgttccgccaaatctatcaga |
31141851 |
T |
|
| Q |
311 |
atgttacaataaaaagtagtcacgtcgtaatagaagcatgatactcaaaccaaaacttcaataaatattcataaatatataaaatcatcgaaatggaacg |
410 |
Q |
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| T |
31141852 |
atgttacaataaaaagtagtcatgtcataatagaagcatgatactcaaaccaaaacttcaataaatattcataaatatataaaatcatcgaaatggaacg |
31141951 |
T |
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| Q |
411 |
aacatacctttaggtgggcattacattagagaaatcacaaaaagtatgcatatcgtcctcaacaactgttccacacctacgacacacaatacatgtgaga |
510 |
Q |
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| T |
31141952 |
aacatacctttaggtgggcattacattagagaaatcacaaaaagtatgcatatcat-ctcaacaactgtaccacacctacgacacataatacatgtgaga |
31142050 |
T |
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| Q |
511 |
tgtctcaaccttctcaaagcattaattggaagactaccatgt |
552 |
Q |
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| T |
31142051 |
tgtctcaaccttctcaaagcattaattggaagactaccatgt |
31142092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 11681412 - 11681314
Alignment:
| Q |
32 |
ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgcgtcccgttgtaaca |
128 |
Q |
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| T |
11681412 |
ggattagtcagcacattgatgcataccacgttaaatcttgtgtcgtttttcatttgtcttttactattattatcattattatcgcgtcccgttataaca |
11681314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 22258514 - 22258602
Alignment:
| Q |
32 |
ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgcgtcc |
118 |
Q |
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| T |
22258514 |
ggattagtcaacacattgctggataccacgtttaatgttgtgtcgttttcattatgtcttttactattattgtcattattctcgcgtcc |
22258602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 1716585 - 1716503
Alignment:
| Q |
34 |
attagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgc |
114 |
Q |
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| T |
1716585 |
attagtcaacacattgttggatactacgttaaatcttatgtcatttttattctgtcttttactattattgtcattattctcgc |
1716503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 1345300 - 1345380
Alignment:
| Q |
51 |
tggatactacgctaaatcttgtgtcg-tttttattttatc--ctactattattatcattattctcgcgtcccgttgtaaca |
128 |
Q |
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| T |
1345300 |
tggatactacgttcaatcttgtgtcgttttttattctatcttttactattattatcattattcttacatcccgttataaca |
1345380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 38969326 - 38969274
Alignment:
| Q |
32 |
ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttatt |
84 |
Q |
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| T |
38969326 |
ggattagtcagcacatggctggataccacgttaaatcttgtgtcgtttttatt |
38969274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 12466126 - 12466222
Alignment:
| Q |
34 |
attagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatcct--actattattatcattattctcgcgtcccgttgtaaca |
128 |
Q |
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|||||||| |||| |||||||||| ||| | ||||||||| |||||| ||| | || | |||||||| ||||||||||||||||||||| ||||| |
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| T |
12466126 |
attagtcagcacattgatggataccacgtttaatcttgtgccgttttcattatgtcttttactattatagtcattattctcgcgtcccgttataaca |
12466222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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