View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_low_6 (Length: 511)
Name: NF13791_low_6
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 232 - 495
Target Start/End: Complemental strand, 44316018 - 44315755
Alignment:
| Q |
232 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattagannnnnnnnctttctccgtagcgttgctatgctcataaatgagtagta |
331 |
Q |
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| T |
44316018 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattagattttttttctttctccgtagcgttgctatgctcataaatgagtagta |
44315919 |
T |
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| Q |
332 |
aagagaaatgctatcagtacagtgacactataatgcttagcccagttaagtagaaaaatagttttgttatattgagattgactcttgctcttggaggatg |
431 |
Q |
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| T |
44315918 |
aagagaaatgctatcagtacagtgacactataatgcttagcccaattaagtagaaaaatagttttgttatattgagattgactcttgctcttggaggatg |
44315819 |
T |
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| Q |
432 |
ctaaaacatttaggcattgaatcaccaaatgcacgagttatggacactattcaatggttgtttg |
495 |
Q |
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| T |
44315818 |
ctaaaacatttagactttgaatcaccaaatgcacgagttatggacactattcaatggttgtttg |
44315755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 44316287 - 44316068
Alignment:
| Q |
10 |
attattctccagccagcaagatctatgaagaagtgattacggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44316287 |
attattctccagccagcaagatctatgaagaagtgattacggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatg |
44316188 |
T |
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| Q |
110 |
tggaaggtatgtgctgcaaattatgaagttgttgtttaaatgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaatt |
209 |
Q |
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| T |
44316187 |
tggaaggtatgtgatgcaaattatgaagttgttgtttaaatgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaatt |
44316088 |
T |
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| Q |
210 |
cctgatttcagaggaattaa |
229 |
Q |
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| T |
44316087 |
cctgatttcagaggaattaa |
44316068 |
T |
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