View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_high_1 (Length: 654)
Name: NF13792_high_1
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 90 - 641
Target Start/End: Complemental strand, 35288803 - 35288251
Alignment:
| Q |
90 |
tggaggatcactaagcagtacaatgggttcttccctggcttgcaacagtaaaatgcaatgtcgaagcaaccatattcaaagatcagcattgtttgggtgt |
189 |
Q |
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| T |
35288803 |
tggaggatcactaagcagtacaatgggttcttccctggcttgcaacagtaaaatgcaatgtcgacgcagccatattcaaagatcagcattgtttgggtgt |
35288704 |
T |
|
| Q |
190 |
tggattttgctgatgaatcatgaagccgatttttaacaacatggacagattggagacaatgggatatgaaagcagcaatggaggaagaagtttggagtct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288703 |
tggattttgctgatgaatcatgaagccgatttttaacaacatggacagattggagacaatgggatatgaaagcagcaatggaggaagaagtttggagtct |
35288604 |
T |
|
| Q |
290 |
tgatcaagaaatcaaatggactgcctcaatgagtgatgcgttatttagagacggattgtaaacaggtgctggataatgtgccccagaaactagttgttcc |
389 |
Q |
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| T |
35288603 |
tgatcaagaaatcaaatggactgcctcaatgagtgatgcgttatttagagacggattgtaaacaggtgctggataatgtgccccagaaactagttgttcc |
35288504 |
T |
|
| Q |
390 |
cgctgcattcagcaactagttccacatcgctatcatccatagcatctatttaaatgaattttaacaaatgctccggaactaaatttcaaacagacgggca |
489 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35288503 |
cgctgcattcagcaactagttccacaacgctatcatccatagcatctatttaaatgaattttaacaaatgctcctgaactaaatttcaaacagacgggca |
35288404 |
T |
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| Q |
490 |
catagcatgcattatctattgccgtaaactatt-aaaattcatcatatttatcacatcaacgtatgaaagccattatagagtcttatagaagatgaagca |
588 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288403 |
catagcatgcattatctattgccgtaagctattaaaaattcatcatatctatcacatcaacgtatgaaagccattatagagtcttatagaagatgaagca |
35288304 |
T |
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| Q |
589 |
atgtgcacaaatcacagctacccatttgaatgagtgcagagaaggaactcaat |
641 |
Q |
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| T |
35288303 |
atgtgcacaaatcacagctacccatttgaatgagtgcagagaaggaactcaat |
35288251 |
T |
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