View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_high_11 (Length: 210)
Name: NF13792_high_11
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_high_11 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: scaffold0531 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 3476 - 3292
Alignment:
| Q |
13 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaa |
112 |
Q |
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| T |
3476 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaa |
3377 |
T |
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| Q |
113 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgtagtggaagttggagtgaacattg |
197 |
Q |
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| T |
3376 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattg |
3292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 8031856 - 8032029
Alignment:
| Q |
13 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaa |
112 |
Q |
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| T |
8031856 |
tatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaa |
8031955 |
T |
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| Q |
113 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgtagtggaagttgg |
186 |
Q |
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| T |
8031956 |
ttaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgg |
8032029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 7979508 - 7979337
Alignment:
| Q |
26 |
tcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacg |
125 |
Q |
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| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
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| Q |
126 |
cgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgtagtggaagttggagtgaacattg |
197 |
Q |
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| T |
7979408 |
cttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattg |
7979337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 8041735 - 8041896
Alignment:
| Q |
13 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaa |
112 |
Q |
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| T |
8041735 |
tatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
8041834 |
T |
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| Q |
113 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgt |
174 |
Q |
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| T |
8041835 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt |
8041896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 7971940 - 7971792
Alignment:
| Q |
26 |
tcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacg |
125 |
Q |
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| T |
7971940 |
tcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatg |
7971841 |
T |
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| Q |
126 |
cgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgt |
174 |
Q |
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| T |
7971840 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt |
7971792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 41382355 - 41382168
Alignment:
| Q |
10 |
gattatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccat |
109 |
Q |
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| T |
41382355 |
gattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataat |
41382256 |
T |
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| Q |
110 |
gaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttgtagtggaagttggagtgaacattg |
197 |
Q |
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| T |
41382255 |
gaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattg |
41382168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 43853128 - 43853219
Alignment:
| Q |
20 |
atcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatga |
111 |
Q |
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| T |
43853128 |
atcttatcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga |
43853219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 14198878 - 14198734
Alignment:
| Q |
53 |
tggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttata |
152 |
Q |
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| T |
14198878 |
tggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtata |
14198779 |
T |
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| Q |
153 |
ttgtggttcctcaacaacttgtagtggaagttggagtgaacattg |
197 |
Q |
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| T |
14198778 |
ttgttgtgccacaacaacttattgttgaagtcggcgttaacattg |
14198734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 38827453 - 38827416
Alignment:
| Q |
53 |
tggcaaatggttgagatgcatgaaatggttcctggaaa |
90 |
Q |
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| T |
38827453 |
tggcaaatggttgagatgcatgaaatagttcccggaaa |
38827416 |
T |
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