View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_high_4 (Length: 435)
Name: NF13792_high_4
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 37570565 - 37570761
Alignment:
| Q |
20 |
taagcctcatcacaccatgcaatatgcatcagcttaaagtttggaataagtcctcttttgggaatgtattagaattaaaaca-gtctgattcaaagaatc |
118 |
Q |
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| T |
37570565 |
taagcctcatcacagtatggaatatgcatcagcttaaagtttgtaataagtcctcttttgggaatgtattagaactaaaagacgtctgattcaaagaatc |
37570664 |
T |
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| Q |
119 |
caaggtattcaggctgcaaatgattgtgattat-----ttatgggaataatatccctttctcttaaaatgcaacttgagcaacgatcaaataaatac |
210 |
Q |
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| T |
37570665 |
caaggtattcaggctgcaagtgattgtgattattttatttatgggaataatatccctttctcttaaaatgcaacttgagcaacgatcaaataaatac |
37570761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 273 - 424
Target Start/End: Original strand, 37570824 - 37570970
Alignment:
| Q |
273 |
attggtcttctatgaacaagttagtcctttnnnnnnnttctaacaaatattattctcaattttgatccaactttcttagaaagtgtttaagtatccattt |
372 |
Q |
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| T |
37570824 |
attggtcttctatgaacaagttagtcctttaaaaaaattctaacaaatattattctcaattt-gatccaactttgttagaaagtgtttacgtatccattt |
37570922 |
T |
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| Q |
373 |
aattaacattaaatcggaaggtccaaaaaatatttatgacatcaattatgat |
424 |
Q |
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| T |
37570923 |
aa----cattaaattggaaggtccaaaaaatatttatgacatcaaatatgat |
37570970 |
T |
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