View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_high_6 (Length: 368)
Name: NF13792_high_6
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 81 - 317
Target Start/End: Original strand, 24837026 - 24837275
Alignment:
| Q |
81 |
aaatttttatactatattttagattttcttttcaataataatatcaaacttgta--gtatgaaatcaaatcaactttactttgttttcacatatacgaaa |
178 |
Q |
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| T |
24837026 |
aaattttgatactatattttagattttcttatcaataata---tcagacttgtatagtatgaaatcaattctagtttactttcttttcacatatactaaa |
24837122 |
T |
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| Q |
179 |
ttgactcagttggagtcttcataatatattgtaattaaaattctattgtcggaagataaca------------aattcatcatggtagctgtgataaaat |
266 |
Q |
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| T |
24837123 |
ttgacttagttggagtctccataatatattgtgattaaaattatattgtcggaagataaaaaaaatcacaaggaattcatcatggtagttgtgattaaat |
24837222 |
T |
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| Q |
267 |
attttgtattta--gggaatcataataaaatatctgcattggactttgtatat |
317 |
Q |
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| T |
24837223 |
attttgtatttaacgtgaatcataataaaatctctgcattggactttgtatat |
24837275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 24845922 - 24846035
Alignment:
| Q |
95 |
tattttagattttcttttcaataataatatcaaacttgtagtatgaaatcaaatcaactttactttgttttcacatatacgaaattgactcagttggagt |
194 |
Q |
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| T |
24845922 |
tattttatattttcttttaaaaaa--atatcagactttcagtatgaaatcaaatcaactttactttcttttcacataaaccaaattgactcagttggagt |
24846019 |
T |
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| Q |
195 |
cttcataatatattgt |
210 |
Q |
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| T |
24846020 |
cttcataatatattgt |
24846035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 24846097 - 24846177
Alignment:
| Q |
240 |
aattcatcatggtagctgtgataaaatattttgtattta--gggaatcataataaaatatctgcattggactttgtatatt |
318 |
Q |
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| T |
24846097 |
aattcatcatgctggttgtgattaaatattttgtatttaacgtgaatcataataaaatctctgcattggactttgcatatt |
24846177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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