View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13792_high_8 (Length: 307)
Name: NF13792_high_8
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37460808 - 37460524
Alignment:
| Q |
1 |
aaaaatgggggtaaaacaacgttttaaattgccgttcgcaatctcatttgtgaccataagatcatcaattttgagacctctgagactgcatcaactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37460808 |
aaaaatgggggtaaaacaacgttttaaattgccgttcgcaatctcatttgtgaccataagatcgtcaattttgagacctctgagactgcatcaactgcat |
37460709 |
T |
|
| Q |
101 |
ttgtctatagtttttcgcaatactaatcctttgttcaacaaatacggtacatgaatctaaatttcatgagtttatggacctcattgcaactatataaaac |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37460708 |
ttgtctataatttttcgcaatactaatcctttgttcaacaaat-tggtacatgaatctaaatttcatgagtttatggacctcattgcaactatataaaac |
37460610 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnncctttaagaatgacattgtaagatgcaaaccttagatggattattcagtaactgatcttttgatgagatgctatc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
37460609 |
---tttttttttttcctttaagaatgacattgtaagatgcaaaccttagatggactattcagtaactgatcttgtgatgagatgctatc |
37460524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University