View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13792_low_12 (Length: 290)

Name: NF13792_low_12
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13792_low_12
NF13792_low_12
[»] chr2 (2 HSPs)
chr2 (7-290)||(37570957-37571240)
chr2 (171-249)||(11862313-11862390)
[»] chr8 (2 HSPs)
chr8 (163-248)||(4187381-4187465)
chr8 (196-248)||(28452042-28452094)
[»] chr1 (5 HSPs)
chr1 (165-255)||(4408301-4408390)
chr1 (163-248)||(4080379-4080463)
chr1 (179-259)||(47763150-47763229)
chr1 (215-259)||(23532837-23532881)
chr1 (171-259)||(32893738-32893825)
[»] chr6 (1 HSPs)
chr6 (169-234)||(20500415-20500479)
[»] scaffold0100 (1 HSPs)
scaffold0100 (164-212)||(39230-39277)
[»] chr7 (1 HSPs)
chr7 (171-241)||(3371436-3371505)
[»] chr4 (2 HSPs)
chr4 (186-259)||(26635915-26635987)
chr4 (196-248)||(56094300-56094352)
[»] chr5 (2 HSPs)
chr5 (196-259)||(34367200-34367263)
chr5 (199-257)||(15089193-15089248)
[»] chr3 (1 HSPs)
chr3 (195-259)||(29491016-29491080)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 37571240 - 37570957
Alignment:
Q  7 tagataatactgaacatctaatatcatttaagtcatataatatatgcacaattattctttataatcatgaaattcagtcaaaaagtgtttatggagatga 106  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  37571240 tagataaaactgaacatctaatatcacttaagtcatataatatatgcacaattattctttataatcatgaaattcagttaaaaagtatttatggagaaga 37571141  T
Q  107 ttattgttggttcaaattcaccgtcttaaaactatggttcatagtgtattaatcggggtcttaatttgaaacaaaatcaatcaattactttgatttataa 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  37571140 ttatcgttggttcaaattcaccgtcttaaaactatggttcatagtgtattaatcggggtcttagtttgaaacaaaatcaaccaattactttgatttataa 37571041  T
Q  207 tgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaatagaaatgaaatgtacttaatcataattgatgt 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  37571040 tgttgtgaatgaaatgtttatctataaaattaggattagattgtgaaacaatagaaatgaaatgtacttaatcatatttgatgt 37570957  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 11862390 - 11862313
Alignment:
Q  171 tttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattg 249  Q
    |||||||||||||  ||| ||||||| |||||||||| ||||  ||||||| ||||||| |||| |||||||| |||||    
T  11862390 tttgaaacaaaattgatcgattactt-gatttataattttgttgatgaaatatttatctgtaaagttaggattgaattg 11862313  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 4187465 - 4187381
Alignment:
Q  163 ggtcttaatttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaatt 248  Q
    |||||||||||||||||||||  ||  ||||||| ||||||||| |||||  ||||||| |||||||||||| |||||||||||||    
T  4187465 ggtcttaatttgaaacaaaattgattgattactt-gatttataacgttgttgatgaaatatttatctataaatttaggattaaatt 4187381  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 28452094 - 28452042
Alignment:
Q  196 ttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaatt 248  Q
    |||||||||||| |||| |||||||| ||||||| ||||||||||||| ||||    
T  28452094 ttgatttataatattgttaatgaaatatttatctttaaaattaggattgaatt 28452042  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 4408390 - 4408301
Alignment:
Q  165 tcttaatttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaac 255  Q
    ||||| ||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||| |||||| ||||||||| |||| ||||| |||||    
T  4408390 tcttagtttaaaataaaattaatcaatta-tttgatttataattttgttaatgaaatatttatcaataaaattaagattgaattgggaaac 4408301  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 4080379 - 4080463
Alignment:
Q  163 ggtcttaatttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaatt 248  Q
    |||||||||||||||||||||  ||| ||||| ||||||| |||| |||| |||||||| ||||||| |||||||| | |||||||    
T  4080379 ggtcttaatttgaaacaaaattgatcgattac-ttgatttgtaatattgttaatgaaatatttatctgtaaaattatgcttaaatt 4080463  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 47763150 - 47763229
Alignment:
Q  179 aaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    |||||| ||||| ||||| ||||||||||||||   ||||||||||||||| ||||||||||||| ||| | |||||||||    
T  47763150 aaaatcgatcaaatactt-gatttataatgttgctgatgaaatgtttatctgtaaaattaggattgaatcgagaaacaata 47763229  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 23532837 - 23532881
Alignment:
Q  215 atgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    ||||||| |||||||||||||||| ||||||||||  ||||||||    
T  23532837 atgaaatatttatctataaaattaagattaaattgaaaaacaata 23532881  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 32893738 - 32893825
Alignment:
Q  171 tttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    ||||||| |||||  ||| ||||||| || ||||||||||||   |||||| ||||||| |||||||| |||| ||||| |||||||||    
T  32893738 tttgaaataaaattgatctattactt-gaattataatgttgttgttgaaatatttatctgtaaaattaagattgaattgggaaacaata 32893825  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 20500479 - 20500415
Alignment:
Q  169 aatttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaa 234  Q
    |||||||||||||||||||||||||| |||||||||||| ||||  ||| ||| ||||||||||||    
T  20500479 aatttgaaacaaaatcaatcaattac-ttgatttataatattgtttatggaatatttatctataaa 20500415  T

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Target: scaffold0100 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 39230 - 39277
Alignment:
Q  164 gtcttaatttgaaacaaaatcaatcaattactttgatttataatgttgt 212  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  39230 gtcttaatttgaaacgaaatcaatcaattac-ttgatttataatgttgt 39277  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 3371436 - 3371505
Alignment:
Q  171 tttgaaacaaaatcaatcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattagga 241  Q
    |||||||||| ||| |||||||| || |||||||| ||||||  ||||||| |||||||||||||||||||    
T  3371436 tttgaaacaatatcgatcaattaatt-gatttatattgttgttgatgaaatatttatctataaaattagga 3371505  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 26635915 - 26635987
Alignment:
Q  186 atcaattactttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    ||||||||||| ||| |||||||||||  || |||| ||||||| |||||||| |||| |||||||||||||||    
T  26635915 atcaattactt-gatctataatgttgttgataaaatatttatctgtaaaattatgattgaattgtgaaacaata 26635987  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 56094300 - 56094352
Alignment:
Q  196 ttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaatt 248  Q
    |||||||||||||||||  || |||| ||||||| |||||||||| |||||||    
T  56094300 ttgatttataatgttgttgatcaaatatttatctgtaaaattaggcttaaatt 56094352  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 34367200 - 34367263
Alignment:
Q  196 ttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    |||||||| ||||||||  ||||||| ||||||| ||||||||||||| |||||  ||||||||    
T  34367200 ttgatttaaaatgttgttgatgaaatatttatctctaaaattaggattgaattggcaaacaata 34367263  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 15089248 - 15089193
Alignment:
Q  199 atttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaa 257  Q
    |||||||||||||   ||||||| ||||||| ||||||||||||| ||||| |||||||    
T  15089248 atttataatgttg---atgaaatatttatctgtaaaattaggattgaattgagaaacaa 15089193  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 29491016 - 29491080
Alignment:
Q  195 tttgatttataatgttgtgaatgaaatgtttatctataaaattaggattaaattgtgaaacaata 259  Q
    ||||||||||||| ||||  ||||||| ||||||| |||||||| |||| |||||  ||||||||    
T  29491016 tttgatttataatattgtcgatgaaatatttatctgtaaaattaagattgaattgaaaaacaata 29491080  T

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