View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13792_low_13 (Length: 238)

Name: NF13792_low_13
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13792_low_13
NF13792_low_13
[»] chr2 (7 HSPs)
chr2 (1-222)||(821381-821602)
chr2 (2-158)||(973652-973808)
chr2 (20-169)||(410544-410693)
chr2 (2-79)||(965166-965243)
chr2 (1-71)||(957809-957879)
chr2 (5-83)||(1400064-1400142)
chr2 (16-83)||(1403796-1403863)
[»] chr3 (1 HSPs)
chr3 (1-221)||(45810062-45810281)
[»] chr1 (2 HSPs)
chr1 (24-171)||(48675085-48675232)
chr1 (41-190)||(22068491-22068639)
[»] chr7 (1 HSPs)
chr7 (19-164)||(12105573-12105718)
[»] chr6 (1 HSPs)
chr6 (4-190)||(10116363-10116545)
[»] chr5 (2 HSPs)
chr5 (25-85)||(36199394-36199454)
chr5 (147-199)||(36199516-36199569)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 821381 - 821602
Alignment:
Q  1 ttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  821381 ttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatc 821480  T
Q  101 tgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgataacatatatgattatgtaagtattatttttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  821481 tgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgataacatatacgattatgtaagtattatttttcc 821580  T
Q  201 tattctctcatttgttccattt 222  Q
    ||||||||||||||||||||||    
T  821581 tattctctcatttgttccattt 821602  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 973808 - 973652
Alignment:
Q  2 tgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaattt 101  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||| ||||||||| |||||||||||||| ||||| || |    
T  973808 tgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagttttacaaactatgaaaatctggagcaacagtaaacgatct 973709  T
Q  102 gaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca 158  Q
    || |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  973708 gatatagaaagtcaattatctccatgcccaaaggcttctgcaacatgtcagctttca 973652  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 410544 - 410693
Alignment:
Q  20 tcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgatta 119  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||  ||||||||| |||| | ||||||| ||||| | | || ||||||| | ||||    
T  410544 tcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactatta 410643  T
Q  120 tctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 169  Q
    ||  |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  410644 tcctcatgtccaagggcttctacaacatgtcaactttcaatttattgata 410693  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 965243 - 965166
Alignment:
Q  2 tgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaat 79  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||| ||||    
T  965243 tgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatgtcaat 965166  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 957879 - 957809
Alignment:
Q  1 ttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaact 71  Q
    |||||||||||||| |||||||  |||| |||||| |||||||||||||||||||||||||||||||||||    
T  957879 ttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaatgcgagagttttagaaact 957809  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 1400064 - 1400142
Alignment:
Q  5 aggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctgg 83  Q
    |||||||||| |||||| ||||||||||||||  ||||||||| ||||||| |||||||||||||||||| ||||||||    
T  1400064 aggccaacaacgtaatcgcattatgttagcaaggtttattctgcagaatgcaagagttttagaaactatgccaatctgg 1400142  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1403796 - 1403863
Alignment:
Q  16 gtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctgg 83  Q
    |||||| ||||||||||||||  ||||||||| | ||||| |||||||||||||||||| ||||||||    
T  1403796 gtaatcgcattatgttagcaaggtttattctggataatgcaagagttttagaaactatgtcaatctgg 1403863  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45810281 - 45810062
Alignment:
Q  1 ttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatt 100  Q
    ||||||||  |||| |||||||  ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| ||| ||| ||  ||||  |     
T  45810281 ttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtc 45810182  T
Q  101 tgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgataacatatatgattatgtaagtattatttttcc 200  Q
    | |||||||||  | ||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||  |    
T  45810181 taaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttcaatttattgataacatatatga-tatgtaagtagtattttctc 45810083  T
Q  201 tattctctcatttgttccatt 221  Q
    ||||||||| |||||| ||||    
T  45810082 tattctctcctttgtttcatt 45810062  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 48675232 - 48675085
Alignment:
Q  24 attatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctc 123  Q
    ||||||||||||| || |||||| || ||||| | ||||||| ||||||||||||| |||||| ||||  | |||  | ||||||||||   ||||||      
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  124 catgcccaagggcttctgcaacatgtcaactttcattttattgataac 171  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  48675132 catgtccaagggcctctgcaacatgtcaactttcagtttattgataac 48675085  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 22068491 - 22068639
Alignment:
Q  41 tattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttct 140  Q
    |||| |||||||| |||||  ||||||||  |||| ||| |||||||  | | |||||  ||||||||||||   ||| ||| ||||||||| |||||||    
T  22068491 tattttgaagaattcgagaaatttagaaatcatgataatttggagcagaagtgaacaacctgaaatagaaagaaaattgtctgcatgcccaaaggcttct 22068590  T
Q  141 gcaacatgtcaactttcattttattgataacatatatgattatgtaagta 190  Q
     |||||||| |||||| | |||| ||||| ||| || || ||||||||||    
T  22068591 acaacatgtgaacttttagtttagtgatagcattta-gactatgtaagta 22068639  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 12105573 - 12105718
Alignment:
Q  19 atcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgatt 118  Q
    |||||||||||||||||| |||||||||||||||| | | ||||||||||| |||| |||||||| ||  |   ||||| | |||||||||||| |||||    
T  12105573 atcacattatgttagcaaaatttattctgaagaattcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgatt 12105672  T
Q  119 atctccatgcccaagggcttctgcaacatgtcaactttcattttat 164  Q
    | |  | ||  |||| |||||||||||||||||||||||| |||||    
T  12105673 aacctcgtgttcaagagcttctgcaacatgtcaactttcaatttat 12105718  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 10116545 - 10116363
Alignment:
Q  4 caggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttga 103  Q
    |||||| ||| ||| ||||||||||| |||| |  ||||||||  |||||||||||||||||||||||||| |||||||| |   |   ||||  | | |    
T  10116545 caggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtctaa 10116446  T
Q  104 aatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgataacatatatgattatgtaagta 190  Q
    |||||||||    |||||  |||| |||||||||||| |||||||| ||||||||    ||| | ||||||||||||||||||||||    
T  10116445 aatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca----attaaaaacatatatgattatgtaagta 10116363  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 36199394 - 36199454
Alignment:
Q  25 ttatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggag 85  Q
    |||||||||||| || |||||| || ||||| ||||||||| ||||||||||||| |||||    
T  36199394 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggag 36199454  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 36199516 - 36199569
Alignment:
Q  147 tgtcaactttcattttattgataacatatatgat-tatgtaagtattatttttc 199  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||| || |||||    
T  36199516 tgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttc 36199569  T

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