View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13792_low_3 (Length: 553)
Name: NF13792_low_3
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_low_3 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Original strand, 18143965 - 18144499
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18143965 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
18144064 |
T |
|
| Q |
114 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144065 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
18144164 |
T |
|
| Q |
214 |
gatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgcca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144165 |
gatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgcca |
18144264 |
T |
|
| Q |
314 |
atagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctct--nnnnnnnn |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144265 |
atagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctctaaaaaaaata |
18144364 |
T |
|
| Q |
412 |
tatatatataacttgaaagggaattattttgattcaaccatttccttatttgaatttgactttcattgccttttctattttgaatacctactaatcacaa |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| || || || ||||||||||||||||||||||||| |
|
|
| T |
18144365 |
tatatatataacttgaaagggaattattttgattcaaccatttccttatttgactttca-tttccttttctattttattttgaatacctactaatcacaa |
18144463 |
T |
|
| Q |
512 |
aatatttatttttgcgcaattttgtaatgctataat |
547 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18144464 |
aatatttatttttgcacaattttgtaatgctataat |
18144499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 48185281 - 48185628
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48185281 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacc |
48185380 |
T |
|
| Q |
114 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
213 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
48185381 |
cgcagaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcg |
48185480 |
T |
|
| Q |
214 |
gatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgcca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185481 |
gatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgcca |
48185580 |
T |
|
| Q |
314 |
atagaaatgttgacctacttcgacagcagatatatcatagattaatgt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185581 |
atagaaatgttgacctacttcgacagcagatatatcatagattaatgt |
48185628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 48189553 - 48189744
Alignment:
| Q |
357 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctctnnnnnnnnt-------atatatataacttgaaagggaattattttgattcaac |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48189553 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctctaaaaaatattatatatatatatataacttgaaagggaattattttaattcaac |
48189652 |
T |
|
| Q |
450 |
catttccttatttgaatttgactttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcgcaattttgtaatgctataat |
547 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
48189653 |
catttccttattt------gactttcatttccttttctattttgaatacctactaatcacaaaataattatttttgcacaattttgtaatgctataat |
48189744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
170 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
261 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 9293775 - 9294013
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293775 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
9293874 |
T |
|
| Q |
114 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293875 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
9293974 |
T |
|
| Q |
214 |
gatttctaacaactagaatggttgaaattaataagatag |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293975 |
gatttctaacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 270 - 547
Target Start/End: Original strand, 9292295 - 9292571
Alignment:
| Q |
270 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgt |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcatagattaatgtgttgatgt |
9292394 |
T |
|
| Q |
370 |
aacataatagaacattcatattgccctgccctctnnnnnnnntatatatataacttgaaagggaattattttgattcaaccatttccttatttgaatttg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9292395 |
aacataatagaacattcatattgccctgccctctaaaaaatatatatatataacttgaaagggaattattttgattcaaccatttccttatttgactttc |
9292494 |
T |
|
| Q |
470 |
actttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcgcaattttgtaatgctataat |
547 |
Q |
| |
|
| |||| || || || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9292495 |
a-tttccttttctattttattttgaatacctactaatcacaaaatatttatttttgcacaattttgtaatgctataat |
9292571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 471 - 531
Target Start/End: Original strand, 29215905 - 29215965
Alignment:
| Q |
471 |
ctttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcgcaat |
531 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29215905 |
ctttcatttccttttctattttgaatacctactaatcacaaaatatttatttttgcacaat |
29215965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 24489233 - 24489470
Alignment:
| Q |
15 |
aattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489233 |
aattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccc |
24489332 |
T |
|
| Q |
115 |
acggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489333 |
acggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgg |
24489432 |
T |
|
| Q |
215 |
atttctaacaactagaatggttgaaattaataagatag |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489433 |
atttctaacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 231422 - 231087
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
113 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
231422 |
taattccccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaacc |
231323 |
T |
|
| Q |
114 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcg |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| ||| || || || ||||| | |
|
|
| T |
231322 |
cagggaccatattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctgcccgtcggtcgggatggtttgtg |
231223 |
T |
|
| Q |
214 |
gatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgcca |
313 |
Q |
| |
|
|||| | |||| ||| | |||| || ||||||| |||||| |||||||| || || ||||| || ||||| | ||||||| | ||||||||||| |
|
|
| T |
231222 |
gattccgaacagctatgacaactgaacctagcaagatagtaattacgacccaagaagtgatgagtacctgggcatgaatttgaaaacctcctatttgcca |
231123 |
T |
|
| Q |
314 |
atagaaatgttgacctacttcgacagcagatatatc |
349 |
Q |
| |
|
|||||| ||||| |||||||| ||| | |||||||| |
|
|
| T |
231122 |
atagaagtgttggcctacttctacacccgatatatc |
231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 354
Target Start/End: Original strand, 34676485 - 34676652
Alignment:
| Q |
186 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgag |
285 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
286 |
catgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcataga |
354 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcataga |
34676652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 22966021 - 22965856
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacc |
113 |
Q |
| |
|
|||||||| || | |||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || | |
|
|
| T |
22966021 |
taattctcaataacgtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatc |
22965923 |
T |
|
| Q |
114 |
cacggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
180 |
Q |
| |
|
||| |||||||||||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965922 |
cacataccatattcttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 25370 - 25503
Alignment:
| Q |
14 |
taattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25370 |
taattctccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaa |
25469 |
T |
|
| Q |
103 |
taaacggaacccacggaccatattcttctccaat |
136 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
25470 |
taaacggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 8868187 - 8868319
Alignment:
| Q |
11 |
agataattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacgga |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||| |
|
|
| T |
8868187 |
agataattctccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatgga |
8868284 |
T |
|
| Q |
111 |
acccacggaccatattcttctccaatctgagtttt |
145 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8868285 |
acccactgaccatattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
105 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
152 |
Q |
| |
|
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| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
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