View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_low_4 (Length: 553)
Name: NF13792_low_4
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Complemental strand, 35512880 - 35512356
Alignment:
| Q |
17 |
agataattcaaagatgagtgctagaaacaccaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcattaag |
116 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512880 |
agataattcaaagatgagtgctagaaacagcaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcattaag |
35512781 |
T |
|
| Q |
117 |
acagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttcccctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512780 |
acagaggccatccaaagttttccatctttctcttccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttcccctt |
35512681 |
T |
|
| Q |
217 |
catcactcagctttatagctgcagcatgaggcttcgtcgccaacaacgcttgcaacggcttgaagtttctaagctttaacaatgctttacgagcccatag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512680 |
catcactcagctttatagctgcagcatgaggctttgtcgccaacaacgcttgcaaccgcttgaagtttctaagctttaacaatgctttacgagcccatag |
35512581 |
T |
|
| Q |
317 |
attagaagatatccacttcgtaaaaggagnnnnnnnggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctgga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512580 |
attagaagatatccacttcgtaaaaggagtttttttggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctgga |
35512481 |
T |
|
| Q |
417 |
agaacagcaaaagtatcgatttggtcaacattaggtccatttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccat |
516 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
35512480 |
agaacagcaaaagtatcgatttggccaacattaggtccattaagccaaagcctcagaatcctgctaatcgaggtttcggctaccagaagaaatgaaccat |
35512381 |
T |
|
| Q |
517 |
ctttgcttaaagcaacaccattggg |
541 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
35512380 |
ctttgcttaaagcaacaccattggg |
35512356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 541
Target Start/End: Complemental strand, 35504244 - 35503724
Alignment:
| Q |
17 |
agataattcaaagatgagtgctagaaacaccaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcattaag |
116 |
Q |
| |
|
||||| |||||||||||||||||| |||| || ||| || ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35504244 |
agatagttcaaagatgagtgctagcaacatcagtataaacactaatatagt----atattgcattctcataaattataaacaccaatataaggcattaac |
35504149 |
T |
|
| Q |
117 |
acagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttcccctt |
216 |
Q |
| |
|
|| || |||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |
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|
| T |
35504148 |
actgatgccatccaaagttttccatctttctcttcaatttcactgatgaacttcaaggtcttcccttcacaatcttccaggacttctaatatttcccctt |
35504049 |
T |
|
| Q |
217 |
catcactcagctttatagctgcagcatgaggcttcgtcgccaacaacgcttgcaacggcttgaagtttctaagctttaacaatgctttacgagcccatag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||| ||||||| |||||||||||| |||||| || |
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|
| T |
35504048 |
catcactcagctttatagctgcagcatgaggcttcatcgccaacgacgcatgcaaccacttgaagtttccaagctttgacaatgctttaccagcccacag |
35503949 |
T |
|
| Q |
317 |
attagaagatatccacttcgtaaaaggagnnnnnnnggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctgga |
416 |
Q |
| |
|
||| ||||| |||||||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||| |
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|
| T |
35503948 |
attggaagacatccactttgcaaaaggagtttctttggcatgcaaagcaacccaaaattgcccttctgaatttctccttacattgtctggaaagcctgga |
35503849 |
T |
|
| Q |
417 |
agaacagcaaaagtatcgatttggtcaacattaggtccatttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccat |
516 |
Q |
| |
|
||||||||||||||||||| |||| || |||| |||||| |||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |
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|
| T |
35503848 |
agaacagcaaaagtatcgacttggccagcatttggtccacgaagccaaagcctcagaatcttgcaagtcgaagtttcagctaccagaagaaatgaaccat |
35503749 |
T |
|
| Q |
517 |
ctttgcttaaagcaacaccattggg |
541 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35503748 |
ctttgcttaaagcaacaccattggg |
35503724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 354 - 538
Target Start/End: Complemental strand, 35491076 - 35490892
Alignment:
| Q |
354 |
gaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggtcaacattaggtc |
453 |
Q |
| |
|
|||| ||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||| || |||||||| || || || | || |||| |
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|
| T |
35491076 |
gaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtc |
35490977 |
T |
|
| Q |
454 |
catttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccatt |
538 |
Q |
| |
|
||| |||||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35490976 |
catgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccatt |
35490892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 35491240 - 35491079
Alignment:
| Q |
76 |
tgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggt |
175 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| | || || ||||||||||||||||||||||| ||||||||||| ||| ||||| ||| |
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|
| T |
35491240 |
tgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggt |
35491141 |
T |
|
| Q |
176 |
cttcccttcacgatcttccagactttctattatttccccttcatcactcagctttatagctg |
237 |
Q |
| |
|
||||| ||| |||||| | |||||| |||||| ||||||||||||||||||| ||||| |
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|
| T |
35491140 |
cttcctttcgaaatcttctaaggtttctaatatttctccttcatcactcagctttacagctg |
35491079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 35497462 - 35497354
Alignment:
| Q |
72 |
atattgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttca |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||| | || || ||||||||||||||||||||||| ||||||||||| ||| ||||| |
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|
| T |
35497462 |
atattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttca |
35497363 |
T |
|
| Q |
172 |
aggtcttcc |
180 |
Q |
| |
|
|||||||| |
|
|
| T |
35497362 |
tggtcttcc |
35497354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 538
Target Start/End: Complemental strand, 40161581 - 40161399
Alignment:
| Q |
356 |
atgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggtcaacattaggtcca |
455 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||| || ||| || ||||||| ||| |
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|
| T |
40161581 |
atgcaaagcaacccaaaactgcccatctgaatttctccttatattgtccggataacctggaagaacggcaaaagtattgacttgaccagcattagggcca |
40161482 |
T |
|
| Q |
456 |
tttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccatt |
538 |
Q |
| |
|
| |||||||| | ||||||| | || |||||||||| |||| ||||| ||| |||| |||||||||||| ||||||||| |
|
|
| T |
40161481 |
tgaagccaaagtcgaagaatccggaaagtcgaggtttcacctactagaaggaataaaccgtctttgcttaaacaaacaccatt |
40161399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 40161739 - 40161584
Alignment:
| Q |
75 |
ttgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaagg |
174 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| || || | ||| ||||||| ||||||||||| ||| ||||||| | | ||| || |
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|
| T |
40161739 |
ttgcattttcataaactataaataccaatataaggcattaacactgatccaatcaaaagtttaccatctttctcatccgcttcactaacatatctcatgg |
40161640 |
T |
|
| Q |
175 |
tcttcccttcacgatcttccagactttctattatttccccttcatcactcagctttatagctgca |
239 |
Q |
| |
|
|||||| |||||| | |||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
40161639 |
tcttcc---------cttccacaatttctaatatttccccttcatcactcaactttatagctgca |
40161584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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