View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13792_low_6 (Length: 459)
Name: NF13792_low_6
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_low_6 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 117 - 459
Target Start/End: Original strand, 41381971 - 41382313
Alignment:
| Q |
117 |
ttgacatatataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggca |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41381971 |
ttgacatatataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggttgggtagatgacacaatacaaattgagcagaggca |
41382070 |
T |
|
| Q |
217 |
aagatcataatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaa |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382071 |
aagatcataatgaaaaagctcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaa |
41382170 |
T |
|
| Q |
317 |
tgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382171 |
tgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaag |
41382270 |
T |
|
| Q |
417 |
acgttttcccggaaccatctcatgcatctcaaccatttgccac |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41382271 |
acgttttcccggaaccatctcatgcatctcaaccatttgccac |
41382313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 43853201 - 43853161
Alignment:
| Q |
418 |
cgttttcccggaaccatctcatgcatctcaaccatttgcca |
458 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||| |
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| T |
43853201 |
cgttttcctggaaccatttcatgcatttcaaccatttgcca |
43853161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 135 - 459
Target Start/End: Original strand, 7971590 - 7971914
Alignment:
| Q |
135 |
ggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaaa |
234 |
Q |
| |
|
|||||| || ||||| || |||||||||| |||| |||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
7971590 |
ggacatgacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaag |
7971689 |
T |
|
| Q |
235 |
ttcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
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|
| T |
7971690 |
ctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgta |
7971789 |
T |
|
| Q |
335 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccat |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
7971790 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccat |
7971889 |
T |
|
| Q |
435 |
ctcatgcatctcaaccatttgccac |
459 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
7971890 |
ctcatgcatctcaaccatttgccac |
7971914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 135 - 459
Target Start/End: Complemental strand, 8042098 - 8041774
Alignment:
| Q |
135 |
ggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaaa |
234 |
Q |
| |
|
|||||| || ||||| || |||||||||| |||| |||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8042098 |
ggacatgacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaag |
8041999 |
T |
|
| Q |
235 |
ttcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
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|
| T |
8041998 |
ctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgta |
8041899 |
T |
|
| Q |
335 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccat |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
8041898 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccat |
8041799 |
T |
|
| Q |
435 |
ctcatgcatctcaaccatttgccac |
459 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8041798 |
ctcatgcatctcaaccatttgccac |
8041774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 124 - 459
Target Start/End: Complemental strand, 8032230 - 8031895
Alignment:
| Q |
124 |
atataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatca |
223 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || ||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8032230 |
atataccaaatggacatgactgctgcaaccaaggatacaccggaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatca |
8032131 |
T |
|
| Q |
224 |
taatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccac |
323 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||| ||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
8032130 |
taatgaaataggtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgtcgcc |
8032031 |
T |
|
| Q |
324 |
cccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgtttt |
423 |
Q |
| |
|
|||||||| ||| | |||||||||||| | |||||| | | ||||||||||| |||||||||||||| || ||||||| ||| |||||| ||||||| |
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|
| T |
8032030 |
cccaacttctactataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgtttt |
8031931 |
T |
|
| Q |
424 |
cccggaaccatctcatgcatctcaaccatttgccac |
459 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |
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|
| T |
8031930 |
cccggaatcatttcatgcatctcaaccatttgccac |
8031895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 458
Target Start/End: Original strand, 7979303 - 7979481
Alignment:
| Q |
280 |
ttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcac |
379 |
Q |
| |
|
||||||||||||| || || |||||||| || ||||||| || |||| || |||||||||||||||||||| |||||| | | ||||| |||| | |
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|
| T |
7979303 |
ttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcc |
7979402 |
T |
|
| Q |
380 |
caaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgcca |
458 |
Q |
| |
|
|||| |||||||| || ||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7979403 |
caaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgcca |
7979481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 124 - 459
Target Start/End: Original strand, 3102 - 3437
Alignment:
| Q |
124 |
atataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatca |
223 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3102 |
atataccaaatggacatgactgctgccaccaaagatacaccagaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatca |
3201 |
T |
|
| Q |
224 |
taatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccac |
323 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||| ||||||||| || ||| ||| |||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
3202 |
taatgaaatatgtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgttcac |
3301 |
T |
|
| Q |
324 |
cccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgtttt |
423 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||| | | ||||||||||| |||||||| ||||| |||| ||||| || |||||| ||||||| |
|
|
| T |
3302 |
cccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgtttt |
3401 |
T |
|
| Q |
424 |
cccggaaccatctcatgcatctcaaccatttgccac |
459 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3402 |
ccaggaaccatttcatgcatctcaaccatttgccac |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 458
Target Start/End: Original strand, 14198614 - 14198878
Alignment:
| Q |
194 |
acaatacaaattgagcagaggcaaagatcataatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgc |
293 |
Q |
| |
|
|||| ||||| ||| |||||||||| ||||| || ||| || ||||||||||| ||||||| | ||||| |||| ||||| || ||||| ||| |
|
|
| T |
14198614 |
acaagacaaagtgaacagaggcaaaaatcattataaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaagattt |
14198713 |
T |
|
| Q |
294 |
acctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttgg |
393 |
Q |
| |
|
|||||||| |||||||||||||||| || || |||| || | ||||||||| |||| ||||| ||| || |||||||||||||| |||| ||| |
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|
| T |
14198714 |
tcctccggttaccatgtagacaatgttaacgccgacttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattga |
14198813 |
T |
|
| Q |
394 |
cccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgcca |
458 |
Q |
| |
|
|||| ||||| |||| |||| | |||||| || || ||||| ||||||||||||||||||||||| |
|
|
| T |
14198814 |
cccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgcca |
14198878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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