View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13792_low_8 (Length: 384)
Name: NF13792_low_8
Description: NF13792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13792_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 15202896 - 15202537
Alignment:
| Q |
10 |
atagtagtgataaacaaagagaagcatatacagagaatgtatatgaacttcaagagggacttgatatttaaaaattgcataagtgagataacaggattaa |
109 |
Q |
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| T |
15202896 |
atagtagtgataaacaaagagaagcatatacagagaacgtatatgaacttcaagagggacttgatatttaaaaattgcataagcgagacaacaagattaa |
15202797 |
T |
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| Q |
110 |
cttgcaaatagtattaaattagaaagtagtataagtgtagaagattttgaaacaagttatgttcaaacttattactcataggcgttgattctgaaaacca |
209 |
Q |
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| T |
15202796 |
cttgcaaatagtattaaattagaaagtattataagtgtagaagattttgaaacaagttatgttctaacttattactcataggcttagattctgaaaacca |
15202697 |
T |
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| Q |
210 |
ataacttccgaaataactgtgagctttggagtgctcatggaaagatcaccagagtgctgcggctcttgcttttgctgtcactgaaccagtattgagaaaa |
309 |
Q |
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| T |
15202696 |
ataacttctgaaacaactgtgagctttggagtgctcatggaaagatcaccagagtgctgcggctcttgcttttgctgtcactgaaccagtattgagaaaa |
15202597 |
T |
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| Q |
310 |
cgttctcagaaaggataaattccccgtttaaccaaattgcgttgtgactcgatatctgtg |
369 |
Q |
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| T |
15202596 |
cgttctcacaaaggataaattccccgtttaaccaaatcgcgctgtgactcgatatctgtg |
15202537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 113 - 364
Target Start/End: Complemental strand, 15213697 - 15213444
Alignment:
| Q |
113 |
gcaaatagtattaaattagaaagtagtataagtgtagaagattttgaaacaagttatgttcaaacttattactcataggcgttgattctgaaaaccaata |
212 |
Q |
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| T |
15213697 |
gcaaatactaatagattaaaaagtagtgtaagtgtagaagattttgaaacaagttatgctctaacttattactcataggcttagattctgacaaccaata |
15213598 |
T |
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| Q |
213 |
acttccgaaataactgtgagctttggagtgctcatggaaagatcacc--agagtgctgcggctcttgcttttgctgtcactgaaccagtattgagaaaac |
310 |
Q |
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| T |
15213597 |
acttctgaaacaactgtgagctttggagtgctcatggaaagatcaccgatgaatgctactgctcttgcttttgctgtcacttaaccagtattgagaaaac |
15213498 |
T |
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| Q |
311 |
gttctcagaaaggataaattccccgtttaaccaaattgcgttgtgactcgatat |
364 |
Q |
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| T |
15213497 |
attgtaagaaagaataaattccccgtttagccaaatcgcgctgtgacttgatat |
15213444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 34036381 - 34036234
Alignment:
| Q |
219 |
gaaataactgtgagctttggagtgctcatggaaagatcacca--gagtgctgcggctcttgcttttgctgtcactgaaccagtattgagaaaacgttctc |
316 |
Q |
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| T |
34036381 |
gaaataactgtgagctttggcgtgctcatagaaagatctccgatgaaagctgctgcaattgcctttgcagtgactgaacctgtattgagaaaatcaacaa |
34036282 |
T |
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| Q |
317 |
agaaaggataaattccccgtttaaccaaattgcgttgtgactcgatat |
364 |
Q |
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|||||||| ||||| ||||||||||||| ||||||||||||||||| |
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| T |
34036281 |
gcaaaggatatattccacgtttaaccaaatcgcgttgtgactcgatat |
34036234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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