View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_high_3 (Length: 450)
Name: NF13793_high_3
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_high_3 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 43804666 - 43805091
Alignment:
| Q |
1 |
gtggagggtggtgcatcaggaaaatgggcaggctgctcgtctacaacagcctgttcagaatggtcaaacatggcagcgacacgtctatttctgagcagca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804666 |
gtggagggtggtgcatcaggaaaatggacaggctgctcgtctacaacagcctgttcagaatggtcaaacatggcagcgacacgtctatttctgagcagca |
43804765 |
T |
|
| Q |
101 |
caattagattggaattgagatttgcgtaagggacgcatatgaaatatttatgggagaaaaactttgtgggtgcaacctatcttgaatgttaaggaggtga |
200 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804766 |
caattagattggaattgagatttgcttaagggacgcatatgaaatatttatgggagaaaaactttgtgggtgcaacctatcttgaatgttaaggaggtga |
43804865 |
T |
|
| Q |
201 |
ggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgtgaacgttttaact |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804866 |
ggcttccgtcttattggcagct----agtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgtgaacgttttaact |
43804961 |
T |
|
| Q |
301 |
tgttagtcaaatgatagaatcgaaataggttgcattttaagtagatgttgtagtattttatcattgttttataacaacttttagttaggagagaaactaa |
400 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
43804962 |
tgttagtcaaatgatagaatcgagataggttgcattttaagtaga---tgtagtattttatcatcgttctataacaacttttagttaggagagaaactaa |
43805058 |
T |
|
| Q |
401 |
tatggttgctcataaccttgttaaggtgaccat |
433 |
Q |
| |
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| T |
43805059 |
tatggttgctcataaccttgttaaggtgaccat |
43805091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 3697 - 3517
Alignment:
| Q |
109 |
ttggaattgagatttgcgtaagggacgcatatgaaatatttatgggagaaaa-actttgtgggtgcaacctatcttgaatgttaaggagg-tgaggcttc |
206 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||| |||||||||| ||| |||||| | ||| | ||| ||||||||||| |||| ||||||||| |
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| T |
3697 |
ttggaattgggatttgcttaagggacgagtatgaaatgtttatgggagcaaagactttgcagttgcgatatattttgaatgttaatgagggtgaggcttc |
3598 |
T |
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| Q |
207 |
cgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgt |
287 |
Q |
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| T |
3597 |
cgacttattagcagcaatcaagtggatgcgagaataagagttcaagcaaactatctttactttggatttgaagagtgttgt |
3517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 2441964 - 2442074
Alignment:
| Q |
171 |
tgcaacctatcttgaatgttaaggagg-tgaggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttacttt |
269 |
Q |
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|||||||||| |||||||||||||||| | |||| || |||||| ||| |||||||||| | ||||||||||||||||| | ||||||||||| | | |
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| T |
2441964 |
tgcaacctatgttgaatgttaaggaggctaaggcgtcatgcttattagcaattatcgagtgggtgcaaaaattagagttcaagcaagttatctttattct |
2442063 |
T |
|
| Q |
270 |
agattcaaaga |
280 |
Q |
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|||||| |||| |
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| T |
2442064 |
agattctaaga |
2442074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Original strand, 45039197 - 45039306
Alignment:
| Q |
239 |
aattagagttcaaaccagttatctttactttagattcaaagactgttgtgaac-gttttaacttgttagtcaaatgatagaatcgaaataggttgcattt |
337 |
Q |
| |
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||||||||||||||| |||||| |||||| | |||||||||| || ||||||| ||||||| | | |||| ||| ||||||| || |||||| ||||| |
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| T |
45039197 |
aattagagttcaaacaagttatttttactcttgattcaaagagtgctgtgaactcttttaacctatgagtc-aataatagaatagaggtaggttccattt |
45039295 |
T |
|
| Q |
338 |
taagtagatgt |
348 |
Q |
| |
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||||||||||| |
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| T |
45039296 |
taagtagatgt |
45039306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 12158712 - 12158761
Alignment:
| Q |
239 |
aattagagttcaaaccagttatctttactttagattcaaagactgttgtg |
288 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
12158712 |
aattagagttcaacaaagttatctttactttagattcaaagagtgttgtg |
12158761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 28790237 - 28790327
Alignment:
| Q |
171 |
tgcaacctatcttgaatgttaagga-ggtgaggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttat |
260 |
Q |
| |
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|||||| ||| ||||||||||| || ||||||||||| | |||||| ||| ||||| || ||||||| ||||||||||||| | |||||| |
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| T |
28790237 |
tgcaacatattttgaatgttaaagatggtgaggcttcagacttattagcaattatcgtgttgatacaacaattagagttcaatcaagttat |
28790327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 2634055 - 2634013
Alignment:
| Q |
385 |
ttaggagagaaactaatatggttgctcataaccttgttaaggt |
427 |
Q |
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|||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
2634055 |
ttaggagagagattaatatggttgctcgtaaccttgttaaggt |
2634013 |
T |
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