View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_high_6 (Length: 332)
Name: NF13793_high_6
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 9736676 - 9736357
Alignment:
| Q |
18 |
tgctcgtcatatatttttcatataatatcatgt-------aaccatgaaaaccaaataaatactcacattcgaggtgtcattttttacacattcatcaaa |
110 |
Q |
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| T |
9736676 |
tgctcgtcatatatttttcatataatatcatgttacatgtaaccatgaaaaccaaataaatactcacattcgaggtgtcattttttacacattcatcaaa |
9736577 |
T |
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| Q |
111 |
ggtaatactaggatac-aaaggcaacatcaacgatgaatttgttcaactgataagagacttgaattttttaaataagtgttcaaatgtttgatctctgac |
209 |
Q |
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| T |
9736576 |
ggtaatactaggataccaaaggtaacatcaacgatgaatttgttcaactggtaagagacttgaatcttttaaataagtgtttaaatgtttgatctctgac |
9736477 |
T |
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| Q |
210 |
tcttgcatatgatgaaaattcagttgagaaggaagagttcaccttgtatgattcatatttccccaaatgagaagtagctaatnnnnnnnc---taagtta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
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| T |
9736476 |
tcttgcatatgatgaaaattcagttgagaaggaagagttcaccttgtatgattcatatttccccaaataagaagtagctaataaaaaaacttataagtta |
9736377 |
T |
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| Q |
307 |
ctaaaattaattatattctt |
326 |
Q |
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|||||||||||||||||||| |
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| T |
9736376 |
ctaaaattaattatattctt |
9736357 |
T |
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