View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_high_7 (Length: 319)
Name: NF13793_high_7
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 30296776 - 30296926
Alignment:
| Q |
152 |
gaagtaacctccttcctaaggttctaattgttctcatctcaannnnnnn-acactttcaaaatagtgatttaaccaccaccttgtannnnnnnnctacta |
250 |
Q |
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| T |
30296776 |
gaagtaacctccttcctaaggttctaattgttctcatctcaattttttttacactttcaaaatagtgatataaccaccaccttgtattttttt-ctacta |
30296874 |
T |
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| Q |
251 |
tacaactcaaatgataaaaggttgcagagacatttaataaatcgggacacag |
302 |
Q |
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| T |
30296875 |
tacaactcaaatgataaaaggttgcagagacatttaataaatcgggacacag |
30296926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30296642 - 30296702
Alignment:
| Q |
18 |
aatatgacatcagaaagaattggattctttgttctcaaagtttatccaattggatagtgga |
78 |
Q |
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| T |
30296642 |
aatatgacatcagaaagaattggattctttgttctcaaagtttatccaattggatagtgga |
30296702 |
T |
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