View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13793_low_1 (Length: 3098)
Name: NF13793_low_1
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 2900; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 2900; E-Value: 0
Query Start/End: Original strand, 1 - 3080
Target Start/End: Original strand, 2338608 - 2341686
Alignment:
| Q |
1 |
ccttaacaaaattcaatttgcttgattcgaagtcacgaacgcttctaatggcagagatgagtcactgtcttttaaggaagaattcagagataaaagctca |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338608 |
ccttaacaaaattcactttgtttgattcaaagtcacgaacgcttctaatggcagagatgagtcactgtcttttaaggaagaattcagagataaaagctca |
2338707 |
T |
|
| Q |
101 |
aatgaccaatccaagttagaacacaaaccttctgaaataaccattttttcaattattgatttcttgtatcttttactgtctagcatttataatttagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2338708 |
aatgaccaatccaagttagaacacaaaccttctgaaataaccattttttcaattatagatttcttgtatcttttactgtctagcatttataatttagcgt |
2338807 |
T |
|
| Q |
201 |
ctgaagcattcaaaattatatctgactgattattattttaggtcaaaatctgcgacgaaaatgcttgatcagttctcaagatttttgattgatatgaaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2338808 |
ctgaagcattcaaaattatatctgactgattattattttaggtcaaaatctgcgacgaaaatgcttgatcaattctcaagatttttgattgatatgaaag |
2338907 |
T |
|
| Q |
301 |
cgctcctgcttgataatgtttatcttatcaatgttctaggtacttgtcacttccactgatctactgcgtgcatcaactgtttttacaatatttcttttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
2338908 |
cgctcctgcttgataatgtttatcttatcaatgttctaggtacttgtcacttccactgatctactgtgtgcatcaactgtttttataatatttcttttat |
2339007 |
T |
|
| Q |
401 |
tttctctaaatttgcatcagaaagcttcggtttttatagcttacttcctgcgaacttcaaattgtaaaatcgtatatgtattttatttttagaaatcata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2339008 |
tttctctaaatttgcatcagaaagcttcggtttttatagcttacttcctgcgaacttcaaattgtaaaatcgcatatgtattttatttttagaaatcata |
2339107 |
T |
|
| Q |
501 |
ttttatcacatctctctttacttaaccctgtgacttgaatatatagatttgtaggtcacatagggtacaactttgtcttaggtgcttactcgtattgggg |
600 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339108 |
ttttatcacatctctctttacttaaacctgtgacttgaatatatatatttgtaggtcacatagggtacaactttgtcttaggtgcttactcgtattgggg |
2339207 |
T |
|
| Q |
601 |
tcccaaagctatctacaatatttataacatggtgaggttttgcttcagccaatgatcccttatgcattaatatacctttactatctcatggttgttcatt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339208 |
tcccaaagctatctacaatatttataacatggtgaggttttgcttcagccaatgatcccttatgcattaatatacctttactatctcatggttgttcatt |
2339307 |
T |
|
| Q |
701 |
cttatatatctcgtttcttgtataaaataaaacacgtttggcattctggtaagcaagatactttcaatataaaaaagtatgatgatgctgttgtcatatt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339308 |
cttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaagcaagatactttcaatataaaaaagtatgatgatgctgttgtcatatt |
2339407 |
T |
|
| Q |
801 |
aaacttggcttattttggcagactgattcagatttggtatttggaggaattacaattgtatgtggaatagtgggcacattagctggaggagttgttctgg |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339408 |
aaacttggcttattttggcagactgattcagatttggtatttggaggaattacaattgtatgtggaatagtgggcacattagctggaggagttgttctgg |
2339507 |
T |
|
| Q |
901 |
attatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagatgggttctagtattacttttataactttttaggttcatagtatct |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2339508 |
attatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagacgggttctagtattacttttataactttttagattcatagtatct |
2339607 |
T |
|
| Q |
1001 |
tatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggttgtaatttgtaaacggtcttctgatctggcatacagt |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339608 |
tatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggttgtaatttgtaaacggtcttctgatctggcatacagt |
2339707 |
T |
|
| Q |
1101 |
tgaaaatttaaagatttcttcacttgagcatacttaacactaatcttttgcagcttctctcagtgacaacatttcttggggcagtattttgttttggtgc |
1200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2339708 |
tgaaaatttaaagatttcttcacttgagcatacttaacactaatcttttgcagcttctctcagtgacaacatttcttggggcagtatgttgttttggtgc |
2339807 |
T |
|
| Q |
1201 |
ctttttatgcagaaatgtgaacggctttcttgttcttttctctattggtgaacttcttgttttttccactcaggtactttccttctatgtcaggaagatc |
1300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339808 |
ctttttatgcagaaatgtgaacggctttcttgttcttttctctattggtgaacttcttgttttttccactcaggtactttccttctatgtcaggaagatc |
2339907 |
T |
|
| Q |
1301 |
tctatgttcgttatattgaaatactgttatttttacatgcttaatgtcaatgagtattttatcagttcttgaattttactctataagctaatcatttgat |
1400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2339908 |
tctatgttcattatattgaaatactgttatttttacatgcttaacgtcaatgagtattttatcagttcttgaatattactctataagctaatcatttgat |
2340007 |
T |
|
| Q |
1401 |
catgaaaattcctagttaaattcttgcaagaatatttatgtgttttaaagtaaaataacttctacatttggaaaattagatgcaaactttctctcaaaga |
1500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340008 |
catgaaaattcctagttaaattcttgcaagaatatttatgtgttttaaagtaaaataacttctacatttggaaaattagatgcaaactttctctcaaaga |
2340107 |
T |
|
| Q |
1501 |
acttaatctcattgtacagttgtttgtgtcttcttttgaatatttacgtttgcttgcggttttcttttcagggtccggtgaattatgtatgtcttcattg |
1600 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340108 |
acttaatctcattgtacggttgtttgtgtcttcttttgaatatttacgtttgcttgcggttttcttttcagggtccggtgaattatgtatgtcttcattg |
2340207 |
T |
|
| Q |
1601 |
tgttaaaccaagtttgaggcctttatccatcgccatgtctactgttgccattcatctctttggagatgtgccttcctcaccacttgttggagttctccag |
1700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340208 |
tgttaaaccaagtttgaggcctttatccatcgccatgtctactgttgccattcatctctttggagatgtgccttcctcaccacttgttggagttctccag |
2340307 |
T |
|
| Q |
1701 |
gtcagccttttacggaggttttagtaaacgcttgtgtctttttcactttaaagttgttgatttcggaaagtagggtggaattgttgcttttcgacacatt |
1800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2340308 |
gtcagccttttacggaggttttagtaaacgcttgtgtctttttcactttaaagttgttgatttcggaaagtagggtggaattgttgctttttgacacatt |
2340407 |
T |
|
| Q |
1801 |
gatggctgaaattaggctagacaagtttaagagaaaaattattaagaagtacataatgtaaaatcatatgcagataatttacttttaatgaaaagcacaa |
1900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340408 |
gatggctgaaattaggctagacaagtttaagagaaaaattattaagaagtacataatgtaaaatcatatgcagataatttacttttaatgaaaagcacaa |
2340507 |
T |
|
| Q |
1901 |
gacctttgttttnnnnnnntttcggaagtatgtgcctgatggaagtcgtaagccgaacatagcaattaattcgatggctatcataaatttaaagagacat |
2000 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340508 |
gacctttgttttaaaaaaatttcggaagtatgtgcctgatggaagtcgtaagccgaacatagcaattaattcgatggctatcataaatttaaagagacat |
2340607 |
T |
|
| Q |
2001 |
caatagctaaaatttaattcccaaacttctaagtatctgattcaaacaacgtgacagcatgattgtttaaatgccattacttgcgaaacagagggaggtt |
2100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340608 |
caatagctaaaatttaattcccaaacttctaagtatctgattcaaacaacgtgacagcatgattgtttaaatgccattacttgcgaaacagagggaggtt |
2340707 |
T |
|
| Q |
2101 |
gagatagagaaaattactggtcacagaaaatgtattacgtacgcgata-tacaagattcatgatttttaatacattatggtaatgcaggatagtattaac |
2199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2340708 |
gagatagagaaaattactggtcacagaaaatgtattacgtacgtgatattacaagattcatgatttttgatacattatggtaatgcaggatagtattaac |
2340807 |
T |
|
| Q |
2200 |
aactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatcttgttcatttaatagtaaaacgg |
2299 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2340808 |
agctggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatcttgttcatttactagtaaaacgg |
2340907 |
T |
|
| Q |
2300 |
agaattggagttagcatttctttcgacatatcattgttgcaagagcaaagatgttataagaaactggagttgttggacatgaatgaaattaattgctata |
2399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2340908 |
agaattggagttagcatttctttcgacatatcattgttgcaagagcaaagatgttataagaaactggagttgttggacatgaatgaaattaattgctata |
2341007 |
T |
|
| Q |
2400 |
aaaatcaaatccaaccaaagtcatgacattttgttatgatggacgttactttgcatgaaaatcatcgtattttcataaatgcctaatacacggaaaagtt |
2499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2341008 |
aaaatcaaatccaaccaaagtcatgacattttgttatgatggacgttactttgcatgaaaatcatcgtattttcataaatgcctaatacacagaaaagtt |
2341107 |
T |
|
| Q |
2500 |
ggaaattatttttattaacagatgctgtgannnnnnnatatatactagcagctgctgtgatttatgtatatgtatatcttgtaggaatatttgtccatag |
2599 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2341108 |
ggaaattatttttattaacagatgctgtgatttttttatatatactagcagctgctgtgatttatgtatatgtatatcttgtaggaatatttgtccatag |
2341207 |
T |
|
| Q |
2600 |
tatggatagatttgaagatgtcagtgagcatcaagtgtcaaaggtcgagaggtcatgcactataccgttgcttcaagagaagaccggagaaacatcacta |
2699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2341208 |
tatggatagatttgaagatgtcagtgagcatcaagtgtcaaaggtcgagaggtcatgcactataccgttgcttcaagagaagaccggagaaacatcatta |
2341307 |
T |
|
| Q |
2700 |
tctcctgcacaatctgaagaatattgatttttcttttgtaaaaggcgaaagaatagttggctttgtgctcactacatggctccgggattcaaaagaatgc |
2799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2341308 |
tctcctgcacaatctgaagaatattgatttttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccgggattcaaaagaatgc |
2341407 |
T |
|
| Q |
2800 |
taaccctatcaacttatagcgtacaaataacctgtactccttttaattaaacaaggtgggatttaatggtttgttacctcaaagttcatagttaattaag |
2899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2341408 |
taaccctatcaacttatagcgtacaaataacctgtactccttttaattaaacaaggtgggatttaatggtttgttacctcaaagttcatagttaattaag |
2341507 |
T |
|
| Q |
2900 |
caagacgtgggatttaactgtcaccttttatgggttgatcttctctaagtaaaaatgtaatgagataaacaaaaatgtttagtggacattcactttttca |
2999 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2341508 |
caag--gtgggatttaactgtcaccttttatgggttgatcttctctaagtaaaaatgtaatgagataaacaaaaatgtttagtggacattcactttttca |
2341605 |
T |
|
| Q |
3000 |
tacacccgcaactccttgtcaatcagaaaaaatgttagttaattcagttgaatagattgttaattcaattcacgtaaaaaa |
3080 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2341606 |
tacacccgcaacaccttgttaatcagaaaaaatgttagttaattcagttgagtagattgttaattcaattcacgtaaaaaa |
2341686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 796 - 1125
Target Start/End: Original strand, 2347034 - 2347362
Alignment:
| Q |
796 |
atattaaacttggcttattttggcagactgattcagatttggtatttggaggaattacaattgtatgtggaatagtgggcacattagctggaggagttgt |
895 |
Q |
| |
|
|||||||| |||| | ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2347034 |
atattaaagttggttaattttggtagaccaatgcagatttggtatttggaggaattacaattgtatgtggaatagtgggcacattagctggaggatttgt |
2347133 |
T |
|
| Q |
896 |
tctggattatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagatgggttctagtattacttttataactttttaggttcatag |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || || || |||||| | |
|
|
| T |
2347134 |
tctggattatatgactaacacattatcaaatgcatttaaggtcggtattcaaattaaagataggttctagtattacttttat-accttctatgttcatcg |
2347232 |
T |
|
| Q |
996 |
tatcttatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggttgtaatttgtaaacggtcttctgatctggcat |
1095 |
Q |
| |
|
||| |||| ||||| |||| |||||||| | ||| |||||||||||||||||| ||||||||||||| || ||||||| || ||||||||| ||||| |
|
|
| T |
2347233 |
tatattataccatatgaattatgcatcctcggctcctcactaaacagctgtggtcatagttatagggttttagtttgtaagtggccttctgatcaggcat |
2347332 |
T |
|
| Q |
1096 |
acagttgaaaatttaaagatttcttcactt |
1125 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
2347333 |
acatttgaaaatttaaagatttcttcactt |
2347362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-86
Query Start/End: Original strand, 1136 - 1425
Target Start/End: Original strand, 2347667 - 2347963
Alignment:
| Q |
1136 |
aacactaatcttttgcagcttctctcagtgacaacatttcttggggcagtattttgttttggtgcctttttatgcagaaatgtgaacggctttcttgttc |
1235 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||| || |
|
|
| T |
2347667 |
aacactattcttttgcagcttctctcagtgacaacatttcttggggcagcattttcttttggagccttcttatgcagaaatgtgaacggctttcttgctc |
2347766 |
T |
|
| Q |
1236 |
ttttctctattggtgaacttcttgttttttccactcaggtactttccttctatgtcaggaagatctctatgttc----gttatattgaaatactgttatt |
1331 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||| ||||| ||||||| |||||||| | || |
|
|
| T |
2347767 |
ttttctctattggtgaacttcttgtttttgccactcaggtactttccttctaactaaggtagatctctgtgttcaattgttatatggaaatactatcctt |
2347866 |
T |
|
| Q |
1332 |
tttacatgcttaat----gtcaatgagtattttatcagttcttgaattttactctataagctaatcatttgatcatgaaaattcctagttaaattctt |
1425 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||| |||||||||||||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
2347867 |
tttacatgcttacttaccatcaatgaatattttatcagttcttgagttttactctataagct-atcacttaatcttgaaaattcctagttaaattctt |
2347963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 3e-81
Query Start/End: Original strand, 1 - 667
Target Start/End: Original strand, 2345550 - 2346216
Alignment:
| Q |
1 |
ccttaacaaaattcaatttgcttgattcgaagtcacgaacgcttctaatggcagagatgagtcactgtcttttaaggaagaattcagagataaaagctca |
100 |
Q |
| |
|
|||||||||| |||| || | |||||| |||||| || | |||||| |||||||||||||| ||| || |||| ||| |||||||||||||| ||| |
|
|
| T |
2345550 |
ccttaacaaagttcactt-gtttgatttaaagtcatgagcccttctaccggcagagatgagtcggtgtacttaaaggcagagttcagagataaaagttca |
2345648 |
T |
|
| Q |
101 |
aatgaccaatccaagttagaacacaaaccttctgaaataaccattttttcaattattgatttcttgtatcttttactgtctagcatttataatttagtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||| | |||||| | ||| ||| || || ||||| |
|
|
| T |
2345649 |
aatgaccaatccaagttagaacacataccttctgaaataactaattttccaattattgatttatctcatctttatc-gtccgacatccatcatctagtgg |
2345747 |
T |
|
| Q |
201 |
ctgaagcattcaaaattatatctgactgattattattttaggtcaaaatctgcgacgaaaatgcttgatcagttctcaagatttttgattgatatgaaag |
300 |
Q |
| |
|
|||| | ||||||||| ||||| | ||||| |||||||||||| ||||||| || |||||| ||||||||||||| || |||| |||||||||||||| |
|
|
| T |
2345748 |
ctgatgttttcaaaattctatcttattgattcttattttaggtctaaatctgttacaaaaatgtttgatcagttctcgaggttttggattgatatgaaag |
2345847 |
T |
|
| Q |
301 |
cgctcctgcttgataatgtttatcttatcaatgttctaggtacttgtcacttccactgatctactgcgtgcatcaact-gttt---ttacaatatttctt |
396 |
Q |
| |
|
| || ||||| |||| |||||| |||||||| |||||||| ||| ||||| ||| ||| |||| |||||| || |||| ||| || |||| | |
|
|
| T |
2345848 |
cacttctgctcaataaggtttatgttatcaatattctaggtgcttctcactcaaactaatcaactgtacgcatcagctagtttacgttataagatttact |
2345947 |
T |
|
| Q |
397 |
ttattttctc--taaatttgcatcagaaagcttcggtttttatagcttacttcc-tgcgaacttcaaattgtaaaatcgtatatgtattttatttttaga |
493 |
Q |
| |
|
||||||| || |||||||| |||||||| | | ||| ||||||||||||| || |||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
2345948 |
ttattttgtcgataaatttgtgtcagaaagatgctatttggatagcttacttccctgtgaacttcatattgtaaaatcgtaaatgtattctatttttaac |
2346047 |
T |
|
| Q |
494 |
aatcatattttatcacatctctctttacttaaccctgtgacttgaatatatagatttgtaggtcacatagggtacaactttgtcttaggtgcttactcgt |
593 |
Q |
| |
|
||| ||||||||| ||||| || ||| ||||||| |||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
2346048 |
aataatattttatgacatcgct--ttatttaaccca-tgacttaaatatata--tttgtaggttacatagcgtacaactttgtcttaggtgcttactcat |
2346142 |
T |
|
| Q |
594 |
attggggtcccaaagctatctacaatatttataacatggtgaggttttgcttcagccaatgatcccttatgcat |
667 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||| |||||||||| ||| |||||| ||||||||| ||| |||| |
|
|
| T |
2346143 |
attggggccccaaagctggctataatatttatcacatggtgagatttcgcttcattcaatgatccgttaggcat |
2346216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-56
Query Start/End: Original strand, 1503 - 1713
Target Start/End: Original strand, 2347991 - 2348194
Alignment:
| Q |
1503 |
ttaatctcattgtacagttgtttgtgtcttcttttgaatatttac---gtttgcttgcggttttcttttcagggtccggtgaattatgtatgtcttcatt |
1599 |
Q |
| |
|
||||||| |||| || |||| ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
2347991 |
ttaatctgattgcacggttggttgtgtcttcttttgaatatttattatgtttggttgtggttttcttt----------gtgaattatgtatgtctccatt |
2348080 |
T |
|
| Q |
1600 |
gtgttaaaccaagtttgaggcctttatccatcgccatgtctactgttgccattcatctctttggagatgtgccttcctcaccacttgttggagttctcca |
1699 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
2348081 |
gtgttaaaccaagtttgaggccactatccatggccatgtctactgttgccattcatctctttggagatgtgccttcctcacctcttgtcggagttctcca |
2348180 |
T |
|
| Q |
1700 |
ggtcagccttttac |
1713 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2348181 |
ggtcagccttttac |
2348194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 2180 - 2275
Target Start/End: Original strand, 2348596 - 2348691
Alignment:
| Q |
2180 |
taatgcaggatagtattaacaactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcat |
2275 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| |||||| ||||||| ||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
2348596 |
taatgcaggatagcattaacaactggagagcaactgcattgatcttaacaaccatattgtttccagcggctggaatatggtttatcggtatgtcat |
2348691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-21
Query Start/End: Original strand, 2655 - 2729
Target Start/End: Original strand, 2349074 - 2349148
Alignment:
| Q |
2655 |
tgcactataccgttgcttcaagagaagaccggagaaacatcactatctcctgcacaatctgaagaatattgattt |
2729 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||||| |
|
|
| T |
2349074 |
tgcactataccgttacttcaagagaagaccggagaaacatcaatatctcatgcacaatctcaagaatgttgattt |
2349148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1736 - 1819
Target Start/End: Original strand, 2348306 - 2348389
Alignment:
| Q |
1736 |
gtctttttcactttaaagttgttgatttcggaaagtagggtggaattgttgcttttcgacacattgatggctgaaattaggcta |
1819 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2348306 |
gtctttttcatttaaaagttgttgatttcagaaagtaaggtggtactgttgcagttccacacattgatggctgaaattaggcta |
2348389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 768
Target Start/End: Original strand, 2321812 - 2321882
Alignment:
| Q |
699 |
ttcttatatatctcgtttcttgtataaaataaaacacgtttggcattctggtaag-caagatactttcaat |
768 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || || |||||| ||||| ||||||||||||||| |
|
|
| T |
2321812 |
ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat |
2321882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 734
Target Start/End: Original strand, 2331344 - 2331447
Alignment:
| Q |
629 |
atggtgaggttttgcttcagccaatgatcccttatgcattaatatacctttactatctcatggttgttcattcttatatatctcgtttcttgtataaaat |
728 |
Q |
| |
|
|||||| | ||||| |||| | ||||||| ||||||||| |||| ||||||||||| || |||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
2331344 |
atggtgtgattttgtttcatcaaatgatcacttatgcatacatattcctttactatc--atagttgttcattcttacatatcttgtttcttatataaaat |
2331441 |
T |
|
| Q |
729 |
aaaaca |
734 |
Q |
| |
|
|||||| |
|
|
| T |
2331442 |
aaaaca |
2331447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 734
Target Start/End: Original strand, 2304234 - 2304276
Alignment:
| Q |
692 |
ttgttcattcttatatatctcgtttcttgtataaaataaaaca |
734 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2304234 |
ttgttcattcttatatatcttgtttcttgtataaaataaaaca |
2304276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 1146 - 1189
Target Start/End: Original strand, 2352616 - 2352659
Alignment:
| Q |
1146 |
ttttgcagcttctctcagtgacaacatttcttggggcagtattt |
1189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
2352616 |
ttttgcagcttctctcagtgacaacatttcttggtgcaggattt |
2352659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 748
Target Start/End: Original strand, 2346276 - 2346334
Alignment:
| Q |
691 |
gttgttcattcttatatatctc-gtttcttgtataaaataaaacacgtttggcattctg |
748 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2346276 |
gttgttcattcttaattatcttagtttcttgtatataataaaacatgtttggcattctg |
2346334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2730 - 2768
Target Start/End: Complemental strand, 5900580 - 5900542
Alignment:
| Q |
2730 |
ttcttttgtaaaaggcgaaagaatagttggctttgtgct |
2768 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
5900580 |
ttctttagtaaaaggcgaaagaatagttcgctttgtgct |
5900542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-30; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-30
Query Start/End: Original strand, 814 - 943
Target Start/End: Complemental strand, 36795688 - 36795559
Alignment:
| Q |
814 |
tttggcagactgattcagatttggtatttggaggaattacaattgtatgtggaatagtgggcacattagctggaggagttgttctggattatatgactaa |
913 |
Q |
| |
|
|||| |||||| || ||||| || ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||| ||||| |||||||| |
|
|
| T |
36795688 |
tttgtcagactaatgcagatatgatatttggaggaattacaattgtatgcggaatattgggcactttagcaggaggccttgttcttgattacatgactaa |
36795589 |
T |
|
| Q |
914 |
cacattatcaaatgcatttaaggttggtat |
943 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
36795588 |
caccctatcaaatgcatttaaggttggtat |
36795559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-26
Query Start/End: Original strand, 1566 - 1711
Target Start/End: Complemental strand, 36794493 - 36794348
Alignment:
| Q |
1566 |
tttcagggtccggtgaattatgtatgtcttcattgtgttaaaccaagtttgaggcctttatccatcgccatgtctactgttgccattcatctctttggag |
1665 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||| |||| || || ||||||||||| || |||||| | || |||| |
|
|
| T |
36794493 |
tttcagggtcccgtgaattttgtatgtctccattgtgttaagccaagtttgaggccactatcaatggctatgtctactgtagctattcatattttcggag |
36794394 |
T |
|
| Q |
1666 |
atgtgccttcctcaccacttgttggagttctccaggtcagcctttt |
1711 |
Q |
| |
|
|||| |||||| | || |||||||||||| ||||||| ||| |||| |
|
|
| T |
36794393 |
atgtaccttccgcgcctcttgttggagttgtccaggttagcatttt |
36794348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2193 - 2276
Target Start/End: Complemental strand, 36794253 - 36794170
Alignment:
| Q |
2193 |
tattaacaactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatc |
2276 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
36794253 |
tattaacaactggagaactaccgcgttgattctaacaacaatattttttccagcagctgcaatatggtttataggtaagtcatc |
36794170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 647
Target Start/End: Complemental strand, 36795908 - 36795827
Alignment:
| Q |
566 |
tacaactttgtcttaggtgcttactcgtattggggtcccaaagctatctacaatatttataacatggtgaggttttgcttca |
647 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||| || | ||| |||||||||||||| ||||| |||| |
|
|
| T |
36795908 |
tacaactttgtcattggtgcttactcgtattggggccccaaagctggttatagtatatataacatggtgagattttgtttca |
36795827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1242 - 1288
Target Start/End: Complemental strand, 36795228 - 36795182
Alignment:
| Q |
1242 |
ctattggtgaacttcttgttttttccactcaggtactttccttctat |
1288 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
36795228 |
ctattggtgaactacttgtttttgccactcaggtacttcccttctat |
36795182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 2730 - 2770
Target Start/End: Complemental strand, 36790890 - 36790850
Alignment:
| Q |
2730 |
ttcttttgtaaaaggcgaaagaatagttggctttgtgctca |
2770 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
36790890 |
ttctttagtaaaaggcgaaagaatagttcgctttgtgctca |
36790850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2730 - 2768
Target Start/End: Original strand, 49588203 - 49588241
Alignment:
| Q |
2730 |
ttcttttgtaaaaggcgaaagaatagttggctttgtgct |
2768 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
49588203 |
ttctttagtaaaaggcgaaagaatagttcgctttgtgct |
49588241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2730 - 2788
Target Start/End: Original strand, 21884105 - 21884163
Alignment:
| Q |
2730 |
ttcttttgtaaaaggcgaaagaatagttggctttgtgctcactacatggctccgggatt |
2788 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||| ||| ||||||| |||| |
|
|
| T |
21884105 |
ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatt |
21884163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2730 - 2788
Target Start/End: Original strand, 43014375 - 43014433
Alignment:
| Q |
2730 |
ttcttttgtaaaaggcgaaagaatagttggctttgtgctcactacatggctccgggatt |
2788 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||| ||| ||||||| |||| |
|
|
| T |
43014375 |
ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatt |
43014433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University