View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_low_10 (Length: 311)
Name: NF13793_low_10
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 19338858 - 19338565
Alignment:
| Q |
1 |
taaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttgaa |
100 |
Q |
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| T |
19338858 |
taaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttgaa |
19338759 |
T |
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| Q |
101 |
ttgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaaaaccacgatga |
200 |
Q |
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| T |
19338758 |
ttgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaaaaccacgatga |
19338659 |
T |
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| Q |
201 |
cagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaacaaaa |
294 |
Q |
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| T |
19338658 |
cagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaacaaaa |
19338565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18010693 - 18010555
Alignment:
| Q |
1 |
taaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttgaa |
100 |
Q |
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| T |
18010693 |
taaaattttgtcttgaattgaccataattgattgattcaagtgacagtgtgatcgagaaacaagttttcttaaatctcatctagatgttccatccttgaa |
18010594 |
T |
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| Q |
101 |
ttgaacttcacattaaccttcaagttaaaaacaaaatct |
139 |
Q |
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| T |
18010593 |
ttgaacttaacattaaccttcaagttaaaaacaaaatct |
18010555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19417522 - 19417470
Alignment:
| Q |
1 |
taaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
53 |
Q |
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|||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
19417522 |
taaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgat |
19417470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 19323797 - 19323716
Alignment:
| Q |
58 |
aaacaagttttcttaaaactcatctagatgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
139 |
Q |
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|||| ||||||| |||| | |||||| ||||||||||||||||||||||| |||| |||| |||| || |||||||||||| |
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| T |
19323797 |
aaaccagttttcgtaaatcccatctatatgttccatccttgaattgaactaaacatgaaccatcaacttcaaaacaaaatct |
19323716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18019244 - 18019202
Alignment:
| Q |
1 |
taaaattttgtcttcaagtaaccataattgattgattcaagtg |
43 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
18019244 |
taaaattttgtcttgaagtgaccataattgattgattcaagtg |
18019202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19379507 - 19379465
Alignment:
| Q |
1 |
taaaattttgtcttcaagtaaccataattgattgattcaagtg |
43 |
Q |
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| T |
19379507 |
taaaattttgtcttgaagtgaccataattgaatgattcaagtg |
19379465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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