View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_low_11 (Length: 304)
Name: NF13793_low_11
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 52 - 299
Target Start/End: Complemental strand, 40121839 - 40121595
Alignment:
| Q |
52 |
acaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcctcataattctttccaaaat |
151 |
Q |
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| T |
40121839 |
acaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgt---tattacctccttttcctcataattctttccaaaat |
40121743 |
T |
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| Q |
152 |
attcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgatagatttttcat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40121742 |
attcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtctctgcttgatagatttttcat |
40121643 |
T |
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| Q |
252 |
tggaagagaaggaacaatgttcttagcagtggtatggtctgtgctgct |
299 |
Q |
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| T |
40121642 |
tggaagagaaggaacaatattcttagcagtggtatggtctgtggtgct |
40121595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 40093019 - 40092811
Alignment:
| Q |
52 |
acaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattctttccaa |
148 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| |||| |||| ||||||||||| |
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| T |
40093019 |
acaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattctttccaa |
40092923 |
T |
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| Q |
149 |
aatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgatagattttt |
248 |
Q |
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| T |
40092922 |
aatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacactgtctttgtttgtgaagttttt |
40092826 |
T |
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| Q |
249 |
cattggaagagaagg |
263 |
Q |
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| T |
40092825 |
cattggaagggaagg |
40092811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 40125491 - 40125283
Alignment:
| Q |
52 |
acaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattctttccaa |
148 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| |||| |||| ||||||||||| |
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| T |
40125491 |
acaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattctttccaa |
40125395 |
T |
|
| Q |
149 |
aatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgatagattttt |
248 |
Q |
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||||||||||||||||||| |||||||||| || ||||||| ||||| ||| ||||||||| ||||||||||||| ||| | || ||| | ||||| |
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| T |
40125394 |
aatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacagtgtctttgtttgtgaagttttt |
40125298 |
T |
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| Q |
249 |
cattggaagagaagg |
263 |
Q |
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||||||||| ||||| |
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| T |
40125297 |
cattggaagggaagg |
40125283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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