View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13793_low_12 (Length: 296)

Name: NF13793_low_12
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13793_low_12
NF13793_low_12
[»] chr2 (4 HSPs)
chr2 (20-293)||(13798826-13799099)
chr2 (153-296)||(41838089-41838231)
chr2 (176-296)||(4983955-4984075)
chr2 (222-294)||(25297294-25297366)
[»] chr5 (4 HSPs)
chr5 (158-291)||(14123025-14123158)
chr5 (221-296)||(12075904-12075979)
chr5 (159-296)||(30511771-30511907)
chr5 (159-296)||(30552111-30552247)
[»] chr1 (6 HSPs)
chr1 (159-296)||(42486409-42486546)
chr1 (155-271)||(23603234-23603350)
chr1 (206-296)||(9887385-9887475)
chr1 (221-296)||(34123584-34123659)
chr1 (206-255)||(38929925-38929974)
chr1 (159-231)||(17694728-17694800)
[»] chr4 (5 HSPs)
chr4 (153-296)||(25411562-25411706)
chr4 (207-296)||(32894940-32895030)
chr4 (155-292)||(32430529-32430666)
chr4 (221-296)||(15502773-15502849)
chr4 (236-296)||(40339469-40339529)
[»] chr3 (5 HSPs)
chr3 (169-296)||(43985723-43985851)
chr3 (222-294)||(14336943-14337016)
chr3 (160-271)||(31070667-31070778)
chr3 (219-296)||(53817134-53817208)
chr3 (221-296)||(21808942-21809018)
[»] chr8 (6 HSPs)
chr8 (222-295)||(28798971-28799044)
chr8 (153-293)||(13076358-13076498)
chr8 (187-292)||(9106768-9106874)
chr8 (174-270)||(41584165-41584260)
chr8 (235-271)||(26423771-26423807)
chr8 (221-296)||(11459767-11459843)
[»] chr7 (1 HSPs)
chr7 (154-271)||(5617898-5618015)
[»] scaffold0530 (1 HSPs)
scaffold0530 (221-296)||(7591-7667)
[»] scaffold0197 (1 HSPs)
scaffold0197 (238-285)||(26008-26055)
[»] scaffold0110 (2 HSPs)
scaffold0110 (222-270)||(11492-11540)
scaffold0110 (222-270)||(19229-19277)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 13799099 - 13798826
Alignment:
Q  20 atggtgtcatgatgtttgtcaaatatgcctcaaggaattgatccatcaatagcttaccagctaagttaaacctagttagaataccaaatccgattctgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13799099 atggtgtcatgatgtttgtcaaatatgcctcaaggaattgatccatcaatagcttaccagctaagttaaacctagttagaagaccaaatccgattctgaa 13799000  T
Q  120 gaaattaaataaatggtatacacataaaaacacaagatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaag 219  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||  |    
T  13798999 gaaattagataaatggtatacacataaaaacacaagatggttgctttttttacattcaatagttcctagaaacacatgtaaaagattaaaaaacccagtg 13798900  T
Q  220 acagttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtatttt 293  Q
     |||||||||||| || |||||| ||||||| |||||| ||||||||||||   ||||||||||||||||||||    
T  13798899 gcagttaactgcttccagttttcgagttataagtcagcggtagttaactactgctgggggtattttagtatttt 13798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 41838089 - 41838231
Alignment:
Q  153 aagatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttatagg 252  Q
    ||||||||||||||| |||||| ||||||||||| ||||||| |||||| || |||||||||||  |  ||||||||   | | |||||||||||||| |    
T  41838089 aagatggttgcttttctgacatccaatagttcctggaaacacatgtaaatgactaaaaaattcagcggtagttaactaacgtc-gttttctagttataag 41838187  T
Q  253 tcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||  |||||||| || | ||||||| |||||| |||||||||    
T  41838188 tcagtggtagttaattatcgttgggggcattttaatattttact 41838231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 4983955 - 4984075
Alignment:
Q  176 caatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagcagtagttaactacctttg 275  Q
    |||||||||| |||||||| |||||| || | |||||||||  |  |||||||| | | || ||||||||||||| || ||| ||||||||||| | ||     
T  4983955 caatagttccgagaaacacatgtaaatgacttaaaaattcagcggtagttaactaccgtcgattttctagttataagttagcggtagttaactatcgttt 4984054  T
Q  276 ggggtattttagtattttact 296  Q
    | || ||||||||||||||||    
T  4984055 gaggcattttagtattttact 4984075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 25297366 - 25297294
Alignment:
Q  222 agttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtatttta 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||||||||||   | | ||||||||||||||||    
T  25297366 agttaactgctgtcagttttctagttataagtcagcggtagttaactaccgccgagagtattttagtatttta 25297294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 14123158 - 14123025
Alignment:
Q  158 ggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagc 257  Q
    ||||||||||||||||||||||||||  || |||||| ||||||||| ||||||| | |  |  ||||||||| ||||||||||||||||||| | ||||    
T  14123158 ggttgcttttttgacattcaatagtttttaaaaacacatgtaaaagactaaaaaactgagtggtagttaactgttgccggttttctagttataagccagc 14123059  T
Q  258 agtagttaactacctttgggggtattttagtatt 291  Q
     |||||||||||||  |||| |||||||||||||    
T  14123058 ggtagttaactaccgctgggagtattttagtatt 14123025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 12075979 - 12075904
Alignment:
Q  221 cagttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||| |||||||||||||||||||    
T  12075979 cagttaactgctgccggttttctagttataagtcagcggtagttaactaccgctggaggtattttagtattttact 12075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 30511771 - 30511907
Alignment:
Q  159 gttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagca 258  Q
    ||||||||| ||||||  ||||  || | |||||||  ||||| || ||||||||||||  | |||||||||||| || ||||||||||||| | |||||    
T  30511771 gttgcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataagccagca 30511869  T
Q  259 gtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||  || | | ||||||| |||||||||    
T  30511870 gtagttaactactgttagagatattttaatattttact 30511907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 30552111 - 30552247
Alignment:
Q  159 gttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagca 258  Q
    ||||||||| ||||||  ||||  || | |||||||  ||||| || ||||||||||||  | |||||||||||| || ||||||||||||| | |||||    
T  30552111 gttgcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataagccagca 30552209  T
Q  259 gtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||  || | | ||||||| |||||||||    
T  30552210 gtagttaactactgttagagatattttaatattttact 30552247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 42486546 - 42486409
Alignment:
Q  159 gttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagca 258  Q
    ||||||||| |||||| |||||  || |  ||||||  ||||| ||||||||||| ||  || ||||||||||||||||||||||||||||| | |||||    
T  42486546 gttgcttttctgacatccaatatgtcttgaaaacacaagtaaatgattaaaaaatccagcgatagttaactgctgccggttttctagttataagccagca 42486447  T
Q  259 gtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||||   || |||||||||||||||||||    
T  42486446 gtagttaactaccgcaggaggtattttagtattttact 42486409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 23603234 - 23603350
Alignment:
Q  155 gatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtc 254  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||  ||  |  | ||||||||| |||||||| |||||||| | |    
T  23603234 gatgtttgcttttttgacattcaatagttcctataaacacatgtaaaagactaaaaaacccagcggtaattaactgcttccggttttttagttataagcc 23603333  T
Q  255 agcagtagttaactacc 271  Q
    ||  |||||||||||||    
T  23603334 agtggtagttaactacc 23603350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 9887475 - 9887385
Alignment:
Q  206 taaaaaattcaaagacagttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||  ||  | ||||||| |||||||||    
T  9887475 taaaaaattcaatggcagttaactgctgccaattttctagttataagtcagtagtagttaactaccgctgaagatattttaatattttact 9887385  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 34123659 - 34123584
Alignment:
Q  221 cagttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||||| |||||||||    
T  34123659 cagttaactgctgccggttttctaactataagttagtggtagttaactaccgttaggggtattttaatattttact 34123584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 38929974 - 38929925
Alignment:
Q  206 taaaaaattcaaagacagttaactgctgccggttttctagttataggtca 255  Q
    |||||||||||| | ||| ||||||||||||||||| |||||||| ||||    
T  38929974 taaaaaattcaatggcaggtaactgctgccggttttatagttataagtca 38929925  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 17694728 - 17694800
Alignment:
Q  159 gttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgc 231  Q
    |||||||||||||| | ||||| ||||||||||||| |  ||| |||||||||| |||  || ||||||||||    
T  17694728 gttgcttttttgacttccaatatttcctagaaacacatcaaaatgattaaaaaactcagcgatagttaactgc 17694800  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 25411562 - 25411706
Alignment:
Q  153 aagatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggtttt-ctagttatag 251  Q
    ||||||||||||||  |||||| ||||||||||||||||||| |||| | || |||||||   || |  |||||||| | |  |||||| |||||||||     
T  25411562 aagatggttgctttcctgacatccaatagttcctagaaacacatgtacatgactaaaaaaactaacggtagttaactaccgttggtttttctagttataa 25411661  T
Q  252 gtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||| || |||||||||||||  ||| |||||||||||||||||||    
T  25411662 gtctgcggtagttaactaccgctggaggtattttagtattttact 25411706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 32894940 - 32895030
Alignment:
Q  207 aaaaaattcaaagacagttaactgctgccggttttctagttatag-gtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||  | |||||||| |||| ||||||| ||||||||  |||||| ||||||||||||| ||| | ||||||||||||||||||    
T  32894940 aaaaaattcagtggcagttaacagctgtcggttttttagttataaagtcagcggtagttaactaccgttgtgagtattttagtattttact 32895030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 292
Target Start/End: Complemental strand, 32430666 - 32430529
Alignment:
Q  155 gatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtc 254  Q
    ||||||||||||| ||||||| |||  |||||| |||||| || |||||| |||||| ||||  |  |||||||| | |||| ||||||||||||| |||    
T  32430666 gatggttgcttttctgacattgaatgtttcctataaacacatgaaaaagactaaaaagttcagcggtagttaactaccgccgattttctagttataagtc 32430567  T
Q  255 agcagtagttaactacctttgggggtattttagtattt 292  Q
     |  |||||||||||||  |||||  |||| |||||||    
T  32430566 tgtggtagttaactaccgctggggacatttaagtattt 32430529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 15502773 - 15502849
Alignment:
Q  221 cagttaactgctgccggttttctagttatag-gtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||| ||| | ||||||||||  |||||| |||||||||||||  | |||||||||||||||||||||    
T  15502773 cagttaactgctgtcgggtctctagttataaagtcagcggtagttaactaccgcttggggtattttagtattttact 15502849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 40339529 - 40339469
Alignment:
Q  236 ggttttctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||||| ||||||| ||||||||||||  ||| ||||| |||||||||||||    
T  40339529 ggttttctagttataagtcagcaatagttaactaccgctggaggtatgttagtattttact 40339469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 43985851 - 43985723
Alignment:
Q  169 tgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttatag-gtcagcagtagttaac 267  Q
    ||||||||||||  || |||||||||  ||||| || |||||||  ||  | || |||||||||||||||||||||||||||| | ||||| ||||||||    
T  43985851 tgacattcaatatgtcttagaaacacaagtaaatgactaaaaaacccagcggcacttaactgctgccggttttctagttatagagccagcaatagttaac 43985752  T
Q  268 tacctttgggggtattttagtattttact 296  Q
    ||||  |||| ||||||||||| ||||||    
T  43985751 taccgctgggagtattttagtaatttact 43985723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 14337016 - 14336943
Alignment:
Q  222 agttaactgctgccggttttctagttatag-gtcagcagtagttaactacctttgggggtattttagtatttta 294  Q
    |||||||||||||||| ||| ||||||||  |||||| ||||||||||||| ||||  ||||||||||||||||    
T  14337016 agttaactgctgccgggtttttagttataaagtcagcggtagttaactaccgttggaagtattttagtatttta 14336943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 31070778 - 31070667
Alignment:
Q  160 ttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagcag 259  Q
    ||||||||||||| | ||||| |||||||||| || || ||| ||||||||||||||  |  |||||| | | | |  ||||||||||||| ||| || |    
T  31070778 ttgcttttttgacttccaatatttcctagaaaaacatgaaaatgattaaaaaattcagcggtagttaattaccgtcaattttctagttataagtcggcgg 31070679  T
Q  260 tagttaactacc 271  Q
    ||||||||||||    
T  31070678 tagttaactacc 31070667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 53817208 - 53817134
Alignment:
Q  219 gacagttaactgctgccggttt-tctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||||||||||||| |||| ||||| ||| |  |||||||||||    ||| |||||||||||||||||||    
T  53817208 gacagttaactgctgccggtttctctaattataagtcggtggtagttaacta----tggaggtattttagtattttact 53817134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 21808942 - 21809018
Alignment:
Q  221 cagttaactgctgccggttttctagttat-aggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    ||||||||||||||||||||||||| ||| | | |||| |||||||||||||  || | ||||||| ||| ||||||    
T  21808942 cagttaactgctgccggttttctagctatcaagccagcggtagttaactaccgctgagagtattttcgtactttact 21809018  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 28798971 - 28799044
Alignment:
Q  222 agttaactgctgccggttttctagttataggtcagcagtagttaactacctttgggggtattttagtattttac 295  Q
    |||||||| | |||||||||||||||||| |||||| ||||||||||| |  |||||| |||||||||||||||    
T  28798971 agttaactaccgccggttttctagttataagtcagcggtagttaactatcactgggggcattttagtattttac 28799044  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 13076498 - 13076358
Alignment:
Q  153 aagatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttatagg 252  Q
    ||||| ||||||| |||||| | ||||  |||||| |||||| || ||| || ||||||| ||   |  |||||||| ||||||||||||||||||||      
T  13076498 aagattgttgcttgtttgacttccaatgtttcctaaaaacacatgaaaatgactaaaaaactccgtggtagttaactactgccggttttctagttataaa 13076399  T
Q  253 tcagcagtagttaactacctttgggggtattttagtatttt 293  Q
    | ||| ||||||||||||| || ||||||||| ||||||||    
T  13076398 ttagcggtagttaactaccgttaggggtatttaagtatttt 13076358  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 9106768 - 9106874
Alignment:
Q  187 agaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttatag-gtcagcagtagttaactacctttgggggtatttt 285  Q
    |||||||| || ||||||||||||||||||  |  ||| ||||| || ||| ||||||||||||  |||||| |||||||||||||  || |||||||||    
T  9106768 agaaacacatgaaaaagattaaaaaattcagcggtagtcaactgatgtcgggtttctagttataaagtcagcggtagttaactaccgctgagggtatttt 9106867  T
Q  286 agtattt 292  Q
    |||||||    
T  9106868 agtattt 9106874  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 41584260 - 41584165
Alignment:
Q  174 ttcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggtcagcagtagttaactac 270  Q
    |||||| ||| ||| |||||| ||||||| |||||||||||||  |  || ||||||||  || ||||||||||||| |||||||||||||||||||    
T  41584260 ttcaatggtttctaaaaacacatgtaaaa-attaaaaaattcagcggtagataactgctctcgattttctagttataagtcagcagtagttaactac 41584165  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 26423807 - 26423771
Alignment:
Q  235 cggttttctagttataggtcagcagtagttaactacc 271  Q
    |||||||||||||||| ||||||||||||||||||||    
T  26423807 cggttttctagttataagtcagcagtagttaactacc 26423771  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 11459843 - 11459767
Alignment:
Q  221 cagttaactgctgccggttt-tctagttataggtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||||||||||| ||||||||   |||||| ||||||||||||   | | | |||||||||||||||||    
T  11459843 cagttaactgctgccggtttctctagttacgagtcagcggtagttaactacagctagagatattttagtattttact 11459767  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 5618015 - 5617898
Alignment:
Q  154 agatggttgcttttttgacattcaatagttcctagaaacacttgtaaaagattaaaaaattcaaagacagttaactgctgccggttttctagttataggt 253  Q
    |||||||||||||| ||||||| |||  ||||||||||||| || |||||| ||||||   ||  |  |||||| | | |||||||||||||||||| |     
T  5618015 agatggttgcttttctgacattgaatgtttcctagaaacacatgaaaaagactaaaaagcccagcggtagttaattaccgccggttttctagttataagc 5617916  T
Q  254 cagcagtagttaactacc 271  Q
    |||| |||||||||||||    
T  5617915 cagcggtagttaactacc 5617898  T

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Target: scaffold0530 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 7591 - 7667
Alignment:
Q  221 cagttaactgctgccggttttctagttatag-gtcagcagtagttaactacctttgggggtattttagtattttact 296  Q
    |||||||||||||  || ||||||||||||  |||||| ||||||||||||| || |||||||||| ||||||||||    
T  7591 cagttaactgctgttgggtttctagttataaagtcagcggtagttaactaccgttcggggtatttttgtattttact 7667  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 26055 - 26008
Alignment:
Q  238 ttttctagttataggtcagcagtagttaactacctttgggggtatttt 285  Q
    ||||||||||||| |||||| ||||||||||||| |||| ||||||||    
T  26055 ttttctagttataagtcagcggtagttaactaccgttggaggtatttt 26008  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 11540 - 11492
Alignment:
Q  222 agttaactgctgccggttttctagttataggtcagcagtagttaactac 270  Q
    |||||||| | | |||||||||||||||| ||| |||||||||||||||    
T  11540 agttaactaccgtcggttttctagttataagtcggcagtagttaactac 11492  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 19277 - 19229
Alignment:
Q  222 agttaactgctgccggttttctagttataggtcagcagtagttaactac 270  Q
    |||||||| | | |||||||||||||||| ||| |||||||||||||||    
T  19277 agttaactaccgtcggttttctagttataagtcggcagtagttaactac 19229  T

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