View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13793_low_14 (Length: 263)

Name: NF13793_low_14
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13793_low_14
NF13793_low_14
[»] chr7 (2 HSPs)
chr7 (133-247)||(3417357-3417471)
chr7 (13-88)||(3417516-3417591)
[»] chr5 (4 HSPs)
chr5 (136-247)||(28385572-28385683)
chr5 (136-247)||(12540923-12541034)
chr5 (14-81)||(12540801-12540868)
chr5 (11-79)||(28385447-28385515)
[»] chr2 (6 HSPs)
chr2 (136-247)||(13440438-13440549)
chr2 (136-247)||(13448601-13448712)
chr2 (136-247)||(13455072-13455183)
chr2 (14-81)||(13448479-13448546)
chr2 (18-88)||(13454954-13455024)
chr2 (18-88)||(13440320-13440390)
[»] scaffold0536 (1 HSPs)
scaffold0536 (136-247)||(6338-6449)
[»] chr4 (7 HSPs)
chr4 (138-247)||(48974349-48974458)
chr4 (11-79)||(48965442-48965510)
chr4 (136-247)||(48958385-48958496)
chr4 (18-88)||(48958264-48958337)
chr4 (136-202)||(48912217-48912283)
chr4 (18-88)||(48961413-48961486)
chr4 (156-202)||(48965587-48965633)
[»] chr6 (4 HSPs)
chr6 (136-244)||(12483294-12483402)
chr6 (140-247)||(12589996-12590103)
chr6 (18-52)||(12590197-12590231)
chr6 (56-88)||(12483450-12483482)
[»] chr8 (1 HSPs)
chr8 (167-244)||(12641311-12641388)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 3417471 - 3417357
Alignment:
Q  133 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  233 gtacaacactgagtt 247  Q
    |||||||||||||||    
T  3417371 gtacaacactgagtt 3417357  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 3417591 - 3417516
Alignment:
Q  13 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 28385572 - 28385683
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  236 caacactgagtt 247  Q
    ||  ||||||||    
T  28385672 cacaactgagtt 28385683  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 12540923 - 12541034
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  236 caacactgagtt 247  Q
    || |||||||||    
T  12541023 caccactgagtt 12541034  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 12540801 - 12540868
Alignment:
Q  14 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 81  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 28385447 - 28385515
Alignment:
Q  11 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 79  Q
    |||||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 13440438 - 13440549
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  236 caacactgagtt 247  Q
    |||||| |||||    
T  13440538 caacaccgagtt 13440549  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 13448601 - 13448712
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  236 caacactgagtt 247  Q
    ||||||||||||    
T  13448701 caacactgagtt 13448712  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 13455072 - 13455183
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  236 caacactgagtt 247  Q
    ||| ||||||||    
T  13455172 caatactgagtt 13455183  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 13448479 - 13448546
Alignment:
Q  14 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 81  Q
    ||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13454954 - 13455024
Alignment:
Q  18 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 88  Q
    ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13440320 - 13440390
Alignment:
Q  18 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 88  Q
    ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

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Target: scaffold0536 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 6449 - 6338
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  236 caacactgagtt 247  Q
    ||||||||||||    
T  6349 caacactgagtt 6338  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 48974349 - 48974458
Alignment:
Q  138 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 237  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  238 acactgagtt 247  Q
     |||||||||    
T  48974449 gcactgagtt 48974458  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 48965442 - 48965510
Alignment:
Q  11 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 79  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 48958385 - 48958496
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  236 caacactgagtt 247  Q
    ||||||||||||    
T  48958485 caacactgagtt 48958496  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 48958264 - 48958337
Alignment:
Q  18 tgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 88  Q
    ||||||||||| ||||||| |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 48912283 - 48912217
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 202  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| |||||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatc 48912217  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  18 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 88  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  156 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 202  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 12483402 - 12483294
Alignment:
Q  136 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 235  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  236 caacactga 244  Q
    |||||||||    
T  12483302 caacactga 12483294  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 12590103 - 12589996
Alignment:
Q  140 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 239  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  240 actgagtt 247  Q
    || |||||    
T  12590003 acagagtt 12589996  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
Q  18 tgtggggcccaacccctaacgatcaaacccttctt 52  Q
    ||||||||||||||||||| |||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  56 aatgtttctctcctcaaatcccttcgacaacca 88  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 12641388 - 12641311
Alignment:
Q  167 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactga 244  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| ||||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactga 12641311  T

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