View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_low_18 (Length: 227)
Name: NF13793_low_18
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 49686952 - 49686754
Alignment:
| Q |
15 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
114 |
Q |
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| T |
49686952 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
49686853 |
T |
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| Q |
115 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatt |
213 |
Q |
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| T |
49686852 |
acaggacgtgaaagagtggttgggctcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatt |
49686754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 49691218 - 49691025
Alignment:
| Q |
15 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
114 |
Q |
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| T |
49691218 |
atgaagattggaactgaaaggtaatttcattagttaaaaagggaaatgggttaccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacga |
49691119 |
T |
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| Q |
115 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaatta |
211 |
Q |
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| T |
49691118 |
acaggacacgaaagagtggttggactcatcatcaaata---ttgaatcgccaaagtaaaaatcatagggatgacaagaactatttatgaagaaatta |
49691025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 49679584 - 49679391
Alignment:
| Q |
15 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
114 |
Q |
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| T |
49679584 |
atgaaggtttgaactgaaaggttatttgatcatctaagaatggaaatggattgccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacga |
49679485 |
T |
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| Q |
115 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaatta |
211 |
Q |
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| T |
49679484 |
acaggacacgaaagagtggttggactcatcatcaaata---ttgaatcgccaaagtaaaaatcatagggatgacaagaactatttctgaagaaatta |
49679391 |
T |
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