View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13793_low_2 (Length: 526)
Name: NF13793_low_2
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13793_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 11544940 - 11544439
Alignment:
| Q |
11 |
cagagacacattcgagtatattttttcgtaatcttgattaattcagagacta----gataacgtttgacatattcaaggaccaaagctacagtatactct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11544940 |
cagagacacattcgagtatattttttcgtaatcttgattaattcagagactatatagataacgtttgacatattcaaggaccaaagctacagtttactct |
11544841 |
T |
|
| Q |
107 |
caattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagca |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11544840 |
caattataaagcaaaagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagcc |
11544741 |
T |
|
| Q |
207 |
gcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcgaaaagagactctaacaccaccaatgctagcaagagttaaatggttca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11544740 |
gcagtaacaatagtgccatttggctggcttgtatcatcgtccgtggtgctgcgaaaagagactctaataccaccaatgctagcaagagttaaatggttca |
11544641 |
T |
|
| Q |
307 |
atttcaattgaccaggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcac |
406 |
Q |
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| T |
11544640 |
attccaattgaccaggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcac |
11544541 |
T |
|
| Q |
407 |
tgaacaataattagcaatacaatattaattattttagctaaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaa |
506 |
Q |
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| T |
11544540 |
tgaacaataattagcaatacaatattaattattttagataaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaa |
11544441 |
T |
|
| Q |
507 |
ac |
508 |
Q |
| |
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|| |
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| T |
11544440 |
ac |
11544439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 61 - 505
Target Start/End: Complemental strand, 11558302 - 11557858
Alignment:
| Q |
61 |
tagataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaa |
160 |
Q |
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||||||||||||||||||| ||||||||||| | ||| | |||||||||||||||| || | |||||||||||||||| |||||||||||||||||||| |
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| T |
11558302 |
tagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgttttgtaggatctttgaggaa |
11558203 |
T |
|
| Q |
161 |
ttcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcga |
260 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||| |
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| T |
11558202 |
ttcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctggcttgcatcatcgtcggtggttgcgcga |
11558103 |
T |
|
| Q |
261 |
aaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccattctct |
360 |
Q |
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| T |
11558102 |
atagagactctaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacatcttcaccattctat |
11558003 |
T |
|
| Q |
361 |
gagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagctaaatataaaatttac |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
11558002 |
cagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattaattaaattcgctaaatataaaatttac |
11557903 |
T |
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| Q |
461 |
aaggaaaatagatgaatagagatttttggaagggtaaatttagaa |
505 |
Q |
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| T |
11557902 |
aaggaaaatagatgaatagagatatttggaagggtaaatttagaa |
11557858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 131 - 405
Target Start/End: Original strand, 12064193 - 12064468
Alignment:
| Q |
131 |
ctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggc |
230 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
|
| Q |
231 |
tggcttgtatcatcgtccatggtgctgcgaaaagagactctaa-caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgtt |
329 |
Q |
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||||||||||||| ||| |||| ||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
12064293 |
tggcttgtatcattgtcggtggtatcgcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgtt |
12064392 |
T |
|
| Q |
330 |
aaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatca |
405 |
Q |
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|| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12064393 |
aagcattcacaaaacattttgaccattctatcagcaagctttatcacactattcctcccttcaagtgtttggatca |
12064468 |
T |
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