View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13793_low_3 (Length: 488)

Name: NF13793_low_3
Description: NF13793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13793_low_3
NF13793_low_3
[»] chr7 (3 HSPs)
chr7 (272-475)||(27776866-27777069)
chr7 (18-166)||(27776629-27776790)
chr7 (344-408)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (344-395)||(41218921-41218972)
chr5 (343-407)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (345-407)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (345-407)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (345-407)||(18254024-18254086)
chr4 (344-408)||(51764235-51764299)
chr4 (346-399)||(22643579-22643632)
chr4 (343-407)||(22176935-22176999)
chr4 (343-407)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (345-407)||(53978164-53978226)
chr3 (343-407)||(8836233-8836297)
chr3 (343-407)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (345-407)||(49641073-49641135)
chr1 (343-407)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (344-408)||(19481630-19481694)
chr2 (344-408)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (343-408)||(34309881-34309946)
chr6 (344-383)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (343-407)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 272 - 475
Target Start/End: Original strand, 27776866 - 27777069
Alignment:
Q  272 atctgatgacaattgtgaagaatttatgtttgagtcttttttacagaagtaagggtattttacattaactttcttgtgttgaaacaccccaacaaaatgg 371  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27776866 atctgatgacaattgagaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatgg 27776965  T
Q  372 ggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacat 471  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  27776966 ggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacat 27777065  T
Q  472 gatg 475  Q
    ||||    
T  27777066 gatg 27777069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 27776629 - 27776790
Alignment:
Q  18 attatatgaagttgattttcctcaatctaatccagttccatt--------------ttgcaaataatacttgtacaaacattcctcattccaatatatgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||| ||    
T  27776629 attatatgaagttgattttcctcaatctaatccagttccatttccttttaaacattttgcaaataatacttgtacaaacattcctcattccaatatacgg 27776728  T
Q  104 cgttacagattaagccatccatcccctattacactcttataagaatgacaattcatatatttt 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  27776729 cgttacagattaagccatccat-ccctattacactcttataagaatgacaattcatagatttt 27776790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 19741093 - 19741157
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 408  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  19741093 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtg 19741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 41218972 - 41218921
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaaca 395  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41218972 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 41218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 26472136 - 26472200
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  26472136 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 27208 - 27146
Alignment:
Q  345 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 15193146 - 15193208
Alignment:
Q  345 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 18254024 - 18254086
Alignment:
Q  345 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 51764235 - 51764299
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 408  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  51764235 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg 51764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 22643579 - 22643632
Alignment:
Q  346 tgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatatt 399  Q
    ||||||||||| |||||||||||||||  ||||||||| ||| |||||||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatatt 22643632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 22176999 - 22176935
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  22176999 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 22176935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 23167505 - 23167441
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    ||||||||||| || |||||||||||||||   |||||||| ||| | ||||| |||||||||||    
T  23167505 tcttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgt 23167441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 53978164 - 53978226
Alignment:
Q  345 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 8836233 - 8836297
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  8836233 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 55310168 - 55310232
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||| ||||||| |||||    
T  55310168 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgt 55310232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 49641135 - 49641073
Alignment:
Q  345 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 52777903 - 52777967
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  52777903 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 52777967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 19481630 - 19481694
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 408  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  19481630 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg 19481694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 11337765 - 11337829
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 408  Q
    |||||||||| || || |||||||||||||  |||||||| ||| ||||||| ||||||||||||    
T  11337765 cttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtg 11337829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 34309881 - 34309946
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 408  Q
    ||||||||||| || || |||||||||||  | || ||||||||| |||||||||| |||||||||    
T  34309881 tcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatcctcaatgtg 34309946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 21320833 - 21320870
Alignment:
Q  344 cttgtgttgaaacaccccaacaaaatggggtggttgaaag 383  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21320833 cttgtgttgaaac--cccaacaaaatggggtggttgaaag 21320870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 11232 - 11296
Alignment:
Q  343 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 407  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  11232 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 11296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University