View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13794_high_2 (Length: 468)
Name: NF13794_high_2
Description: NF13794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13794_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 5669118 - 5669571
Alignment:
| Q |
1 |
aaccaatctgcatggatgatgatgagtatattgaaggcgactagacagctggataaaccatccaaacccatcggcacaccctaaaatgccgccatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5669118 |
aaccaatctgcatggatgatgatgagtatattgaaggcgactagacagctggat-------ccaaacccatcggtacaccctaaaatgccgccatatcca |
5669210 |
T |
|
| Q |
101 |
gagattccagacggtctaagattgctatgtcaagattctgattaatcaagaatctagacctcattctcagtttgtgaaacacaacaccacaaatcaagca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669211 |
gagattccagacggtctaagattgcaatgtcaagattctgattaatcaagaatctagacctcattctcagtttgtgaaacacaacaccacaaatcaagca |
5669310 |
T |
|
| Q |
201 |
actattcactccaaggaaatctggaattcaatttggcttccaattttcttttcaagttgcttagttcttgtcagccagtccgatgatttagcatccagcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5669311 |
actattcactccaaggaaatctggaattcaatttggcttccaattttcttttcaagttgctcagttcttgtcagccagcccgatgatttatcatccagcc |
5669410 |
T |
|
| Q |
301 |
cgaattctccattatgccattgtaggcagcgtttgaattcttttcaacattatctcacactacacagtgattttatgtccctcgtaagaatcttgttcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669411 |
cgaattctccattatgccattgtaggcagcgtttgaattcttttcaacattatctcacactacacagtgattttatgtccctcgtaagaatcttgttcat |
5669510 |
T |
|
| Q |
401 |
ccacttcctcatcaagaaggaaaccatcgatttcgggaacatatccgtcccacttcatctc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669511 |
ccacttcctcatcaagaaggaaaccatcgatttcgggaacatatccgtcccacttcatctc |
5669571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 60 - 461
Target Start/End: Original strand, 5694222 - 5694623
Alignment:
| Q |
60 |
atccaaacccatcggcacaccctaaaatgccgccatatccagagattccagacggtctaagattgctatgtcaagattctgattaatcaagaatctagac |
159 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5694222 |
atccaaacccatcggtacaccctaaaatgccgccatatccagagattccagacggtctaagattgcaatgtcaagattctgattaatcaagaatctagac |
5694321 |
T |
|
| Q |
160 |
ctcattctcagtttgtgaaacacaacaccacaaatcaagcaactattcactccaaggaaatctggaattcaatttggcttccaattttcttttcaagttg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5694322 |
ctcattctcagtttgtgaaacacaacaccacaaatcaagcaactattcactccaaggaaatctggaattcaatttggcttccaattttcttttcaagttg |
5694421 |
T |
|
| Q |
260 |
cttagttcttgtcagccagtccgatgatttagcatccagcccgaattctccattatgccattgtaggcagcgtttgaattcttttcaacattatctcaca |
359 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5694422 |
ctcagttcttgtcagccagcccgatgatttatcatccagcccgaattctccattatgccattgtaggcagcgtttgaattcttttcaacattatctcaca |
5694521 |
T |
|
| Q |
360 |
ctacacagtgattttatgtccctcgtaagaatcttgttcatccacttcctcatcaagaaggaaaccatcgatttcgggaacatatccgtcccacttcatc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5694522 |
ctacacagtgattttatgtccctcgtaagaatcttgttcatccacttcctcatcaagaaggaaaccatcgatttcgggaacatatccgtcccacttcatc |
5694621 |
T |
|
| Q |
460 |
tc |
461 |
Q |
| |
|
|| |
|
|
| T |
5694622 |
tc |
5694623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University