View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13795_high_3 (Length: 503)
Name: NF13795_high_3
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_high_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 22 - 503
Target Start/End: Complemental strand, 44780635 - 44780147
Alignment:
| Q |
22 |
cggctataattcattttt-aaaatgaataagcggagtgtccgagttcaaattcatatgtattgttcatgtcaactgaactaaacttacagatccataaat |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44780635 |
cggctataattcattttttaaaatgaataaacggagtgtccgagtttaaattcatatgtattattcatgtcaactgaactaaacttatagatccataaat |
44780536 |
T |
|
| Q |
121 |
cgatttttaatataactcaaacggaattttaagacatgaacaaaaacagaacataatatactatgcatatttcgatttcattgtttttc-gtcaattaca |
219 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44780535 |
caatttttaatataactcaaacggatttttaagacatgaacaaaagcagaacataatatagtgtgcatatttcgatttcattgtttttccgtcaattaca |
44780436 |
T |
|
| Q |
220 |
actaaggaccatttttaatttattacttac-----aatgctcttagaagcttatgtcattatatcacttgaaataacataaccaattacttttttcaata |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44780435 |
actaaggaccatttttaatttattactccattgtgaatgttcttagaagcttatgtcattatatcccttgaaataacataaccaattacttttttcaata |
44780336 |
T |
|
| Q |
315 |
tatcgaccaaaacttttaacaagactttgtataaataccctatcaaagacatcagcctaaactctgatattttaacaaaacaaataatcttttttgaaat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44780335 |
tatcgaccaaaacttttaacaagactttgtataaataccctatcaaagatatcagcctaaaatctgatattttaacaaaacaaataatcttttttgaaat |
44780236 |
T |
|
| Q |
415 |
caacactacaaataaacaaatttccctttcatcatccgatcatttgcgtggaattcaaccattatcctaaaaaagtcatatttaatgtc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44780235 |
caacactacaaataaacaaatttccctttcatcatccgatcatttgcgtggaattcaaccattatcctaaaaatgtcatatttaatgtc |
44780147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University