View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13795_low_1 (Length: 888)
Name: NF13795_low_1
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 9 - 872
Target Start/End: Complemental strand, 181280 - 180417
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
181280 |
gacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgat |
181181 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181180 |
attgagacatataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
181081 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
181080 |
caattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
180981 |
T |
|
| Q |
309 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
408 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
180980 |
atatttggggtagggagggtaatagagccaacatgtgaaatattcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
180881 |
T |
|
| Q |
409 |
gctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
180880 |
gctgcatattgttcagatttgatgttatatgatgactggctctagtgtcgaacacccagttaggagcagccgaatgtgaagtagaagcgaaatttgccat |
180781 |
T |
|
| Q |
509 |
tggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgag |
608 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
180780 |
tggttgattgttgcgttgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaagtctatttccacatgag |
180681 |
T |
|
| Q |
609 |
ttgaaacctcgacctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaa |
708 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
180680 |
ttgaaacctcgacctctaccacgatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccggggatggaa |
180581 |
T |
|
| Q |
709 |
ttggaaggatacaatcatcttttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcg |
808 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
180580 |
ttggaaggataccatcatctttcgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcg |
180481 |
T |
|
| Q |
809 |
acgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaaagggtgttgg |
872 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
180480 |
acgcatgtagtcctcatgtgcgagaagagggctatgaagcttctcgaaggtaaaagggtgttgg |
180417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 9 - 872
Target Start/End: Complemental strand, 1701707 - 1700844
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
1701707 |
gacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgat |
1701608 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1701607 |
attgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtg |
1701508 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1701507 |
aaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
1701408 |
T |
|
| Q |
309 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
1701407 |
gtattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggagtgca |
1701308 |
T |
|
| Q |
409 |
gctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1701307 |
gctgcatattgttcagatttgatgttatatgatgactggctcctgtgtcgaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttgccac |
1701208 |
T |
|
| Q |
509 |
tggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgag |
608 |
Q |
| |
|
||||||||||||||| || ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1701207 |
tggttgattgttgcgttgtagcagctgaggacaatacttagcaatatggccaagcaaagagcagagttgacatcttggtggaggtctatttccacgtgag |
1701108 |
T |
|
| Q |
609 |
ttgaaacctcgacctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaa |
708 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
1701107 |
ttgaaacctcgacctctaccacgatagttagacccacgagtattggatccatggtgctgggattgtttagagaaattgttaccacgtcctgtggatggaa |
1701008 |
T |
|
| Q |
709 |
ttggaaggatacaatcatcttttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcg |
808 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1701007 |
ttggaaggataccatcatcctttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcg |
1700908 |
T |
|
| Q |
809 |
acgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaaagggtgttgg |
872 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
1700907 |
acgcaggtagtcatcatgtgcgagaagatggctatgaagctcctcaaaggtaaaagggtgttgg |
1700844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 336 - 474
Target Start/End: Original strand, 26593053 - 26593191
Alignment:
| Q |
336 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgtta |
435 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| | | |
|
|
| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttgtgctga |
26593152 |
T |
|
| Q |
436 |
tacgatgactggctccagtgtcaaacacccagttaggag |
474 |
Q |
| |
|
|| |||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
26593153 |
tatgatggctggccccagtatcaaacacccaattaggag |
26593191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 331 - 474
Target Start/End: Complemental strand, 5400124 - 5399981
Alignment:
| Q |
331 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
430 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| | |
|
|
| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
5400025 |
T |
|
| Q |
431 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
474 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
5400024 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
5399981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 331 - 474
Target Start/End: Complemental strand, 3541121 - 3540978
Alignment:
| Q |
331 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
430 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| | |
|
|
| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
3541022 |
T |
|
| Q |
431 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
474 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
3541021 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
3540978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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