View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13795_low_13 (Length: 250)
Name: NF13795_low_13
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_13 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 916341 - 916105
Alignment:
| Q |
14 |
gaagaaaagcaagtatctgtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtat |
113 |
Q |
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| T |
916341 |
gaagaaaagcaagtatctgtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtat |
916242 |
T |
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| Q |
114 |
aacattgaggtatttcaagagttggaacttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggc |
213 |
Q |
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| T |
916241 |
aacattgaggtatttcaagagttggaacttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggc |
916142 |
T |
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| Q |
214 |
gtgagatttctgttggcgaatttgtttggggaaagat |
250 |
Q |
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| T |
916141 |
gtgagatttctgttggcgaatttgtttggggaaagat |
916105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 1001346 - 1001525
Alignment:
| Q |
14 |
gaagaaaagcaagtatctgtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtat |
113 |
Q |
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| T |
1001346 |
gaagaaaagcaagtatttgtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggcccgctttctcctcgagtttcaaagtat |
1001445 |
T |
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| Q |
114 |
aacattgaggtatttcaagagttggaacttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttga |
193 |
Q |
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| T |
1001446 |
aacagtgaggcatttcaagagtttgaattttctgttagcttgaatcaccaaacaccagatgatgagaaagagactcttga |
1001525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 917452 - 917392
Alignment:
| Q |
190 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagat |
250 |
Q |
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| T |
917452 |
ttgaggatttgatcgatgaaaggtgtgacttttctgttggtgattttgtttggggaaagat |
917392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 1000235 - 1000295
Alignment:
| Q |
190 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagat |
250 |
Q |
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| T |
1000235 |
ttgacgatttgattgatgaaaggtgtgacttttctgttggagattttgtttggggaaagat |
1000295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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