View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13795_low_2 (Length: 729)

Name: NF13795_low_2
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13795_low_2
NF13795_low_2
[»] chr3 (1 HSPs)
chr3 (13-710)||(44427462-44428172)
[»] chr4 (5 HSPs)
chr4 (384-427)||(43188607-43188650)
chr4 (390-428)||(5654611-5654649)
chr4 (383-428)||(18513261-18513306)
chr4 (370-424)||(7727983-7728037)
chr4 (394-428)||(10546153-10546187)
[»] scaffold0571 (1 HSPs)
scaffold0571 (392-427)||(7693-7728)
[»] chr8 (2 HSPs)
chr8 (390-428)||(34201066-34201104)
chr8 (459-504)||(27219851-27219896)
[»] chr7 (4 HSPs)
chr7 (455-497)||(21968855-21968897)
chr7 (208-254)||(27667212-27667258)
chr7 (390-428)||(38134426-38134464)
chr7 (394-428)||(44172910-44172944)
[»] chr6 (1 HSPs)
chr6 (394-428)||(2140501-2140535)
[»] chr5 (3 HSPs)
chr5 (390-428)||(28296329-28296367)
chr5 (390-428)||(32428946-32428984)
chr5 (395-428)||(11596475-11596508)
[»] chr2 (3 HSPs)
chr2 (390-428)||(18570973-18571011)
chr2 (390-428)||(30563410-30563448)
chr2 (390-428)||(40681983-40682021)
[»] chr1 (2 HSPs)
chr1 (390-428)||(40747793-40747831)
chr1 (395-428)||(11571591-11571624)


Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 13 - 710
Target Start/End: Original strand, 44427462 - 44428172
Alignment:
Q  13 aatatgagcggcatatacctgtacagcacgga--aaacataagatttgtaattttccatcccaaacaagcaacgatttgaacaatcagagatctcaaact 110  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44427462 aatatgagtggcatatacctgtacagcacggagaaaacataagatttgtaattttccatcccaaacaagcaacgatttgaactatcagagatctcaaact 44427561  T
Q  111 taaaagcggacaaagcaggattcatggtaagcaacatgaaaaccatgaatcatcattccaatctcttgtattcttgattcaacaaggttttaaataagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44427562 taaaagcggacaaagcaggattcatggtaagcaacatgaaaaccatgaatcatcattccaatctcttgtattcttgattcaacaaggttttaaataagga 44427661  T
Q  211 cttgggtattatgaggtgactaagtcccatgtcgagtagtatgactatgaggtgtccagtggagtatttaagtggcatgattcttcctccttggtagcta 310  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44427662 cttgggtattatgaggtgactaagtcccatgtcgagtagtgtgactatgaggtgtccggtggagtatttaagtggcatgattcttcctccttggtagcta 44427761  T
Q  311 gtgttagaattgaataatatttaaggtagttagttatgctttgttgaaagcacaaatacggacaccagtcatgacacatacactgataataag-ttgaga 409  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  44427762 gtgttagaattgaataatatttaaggtagttagttatgatttgttgaaagcacaaatacggacaccagtcatggcacatacactgataataagtttgaga 44427861  T
Q  410 aaatgacataattca----------atgtgttggtatcgtgtcattataggatatcactgacacatgtcagacaccagacacaccttcaatcaaaagtat 499  Q
    |||||||||||| ||          |||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  44427862 aaatgacataatccaatgtaatcacatgtgtcggtgtcgtgtcattataagatattactgacacatgtcagacaccagacacgccttaaatcaaaagtat 44427961  T
Q  500 tggttgctacaaaggttgcaagttgattaattttagttaacttagttaggatgcttatcattgctaaaaattcgtcaattttgttttaatgagtgttaaa 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44427962 tggttgctacaaaggttgcaagttgattaattttagttaacttagttatgatgcttatcattgctaaaaattcgtcaattttgttttaatgagtgttaaa 44428061  T
Q  600 gccaaaagattttagatttccctccatctctattcttcttcatcctattaacaaaaatgacaaccttcacttcgaaatatggttactaccctggaaattc 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44428062 gccaaaagattttagatttccctccatctctattcttcttcatcctattaacaaaaatgacaaccttcacttcgaaatatggttactaccctggaaattc 44428161  T
Q  700 acataacagct 710  Q
    |||||||||||    
T  44428162 acataacagct 44428172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 43188607 - 43188650
Alignment:
Q  384 acacatacactgataataagttgagaaaatgacataattcaatg 427  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||    
T  43188607 acacagacactgataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 5654649 - 5654611
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5654649 acactgataataatttgagaaaatgacataattcaatgt 5654611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 18513306 - 18513261
Alignment:
Q  383 gacacatacactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||    
T  18513306 gacacagacaccgataataatttgagaaaatgacataattcaatgt 18513261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 7728037 - 7727983
Alignment:
Q  370 ggacaccagtcatgacacatacactgataataagttgagaaaatgacataattca 424  Q
    ||||||| | || |||||| |||| |||||||||||||||||||||||| |||||    
T  7728037 ggacaccggacacgacacagacaccgataataagttgagaaaatgacatgattca 7727983  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 428
Target Start/End: Original strand, 10546153 - 10546187
Alignment:
Q  394 tgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||||||| |||||||||||||||||||||||||    
T  10546153 tgataataatttgagaaaatgacataattcaatgt 10546187  T

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Target: scaffold0571 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 7693 - 7728
Alignment:
Q  392 actgataataagttgagaaaatgacataattcaatg 427  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7693 actgataataatttgagaaaatgacataattcaatg 7728  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 34201104 - 34201066
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  34201104 acactaataataatttgagaaaatgacataattcaatgt 34201066  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 27219851 - 27219896
Alignment:
Q  459 gacacatgtcagacaccagacacaccttcaatcaaaagtattggtt 504  Q
    ||||||||| ||||||||||||||||||| |||| |||| ||||||    
T  27219851 gacacatgttagacaccagacacaccttcgatcagaagtgttggtt 27219896  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 21968855 - 21968897
Alignment:
Q  455 cactgacacatgtcagacaccagacacaccttcaatcaaaagt 497  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||    
T  21968855 cactgacacgtgtcagacaccagacacgccttcaatctaaagt 21968897  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 27667258 - 27667212
Alignment:
Q  208 ggacttgggtattatgaggtgactaagtcccatgtcgagtagtatga 254  Q
    |||||||||||||||| |||| ||||||||||  |||||||||||||    
T  27667258 ggacttgggtattatggggtggctaagtcccacatcgagtagtatga 27667212  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 38134464 - 38134426
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgt 38134426  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 44172944 - 44172910
Alignment:
Q  394 tgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||||||| |||||||||||||||||||||||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgt 44172910  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 2140535 - 2140501
Alignment:
Q  394 tgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||||||| |||||||||||||||||||||||||    
T  2140535 tgataataatttgagaaaatgacataattcaatgt 2140501  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 28296329 - 28296367
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  28296329 acaccgataataatttgagaaaatgacataattcaatgt 28296367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 32428984 - 32428946
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  32428984 acactgataataatttgagaaagtgacataattcaatgt 32428946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 428
Target Start/End: Complemental strand, 11596508 - 11596475
Alignment:
Q  395 gataataagttgagaaaatgacataattcaatgt 428  Q
    |||||||| |||||||||||||||||||||||||    
T  11596508 gataataatttgagaaaatgacataattcaatgt 11596475  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 18570973 - 18571011
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgt 18571011  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 30563410 - 30563448
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  30563410 acacggataataatttgagaaaatgacataattcaatgt 30563448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 40681983 - 40682021
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgt 40682021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 40747831 - 40747793
Alignment:
Q  390 acactgataataagttgagaaaatgacataattcaatgt 428  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  40747831 acacggataataatttgagaaaatgacataattcaatgt 40747793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 11571591 - 11571624
Alignment:
Q  395 gataataagttgagaaaatgacataattcaatgt 428  Q
    |||||||| |||||||||||||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgt 11571624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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