View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13795_low_4 (Length: 507)
Name: NF13795_low_4
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Original strand, 5365527 - 5366008
Alignment:
| Q |
11 |
gatgaataacgttgaatttaaatggaactcccatgagtcttgcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccaccagc |
110 |
Q |
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| T |
5365527 |
gatgaataacgttgaatttaaatggaactcccatgagtctagcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccaccagc |
5365626 |
T |
|
| Q |
111 |
agtgacgatggtagttagacggaggtgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaata |
210 |
Q |
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| T |
5365627 |
agtgacgatggtagttagacggaggtgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaata |
5365726 |
T |
|
| Q |
211 |
tcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgcatgcgacatggccgaaggttgtccacggactaacttcttggaatt |
310 |
Q |
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| T |
5365727 |
tcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgcatgcgacatggccgaaggttgtccacggactaacttcttggaatt |
5365826 |
T |
|
| Q |
311 |
ttagaaccgtttttcttgttgattcgaaagagcaagttttttctgatgctgaagctagggttcggaaggttcgggtaccggcttcggtcattcgagagaa |
410 |
Q |
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| T |
5365827 |
ttagaaccgtttttcttgttgattcgaaagagcaagttttttctgatgctgaagctagggttcggaaggttcgggtaccggcttcggtcattcgagagaa |
5365926 |
T |
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| Q |
411 |
taaggcttggagaaaatatgcagctagtttttgttctatgtcaccataaggggagcttagttcgttaagcatccacatgagt |
492 |
Q |
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| T |
5365927 |
taaggcttggagaaaatatgcagctagtttttgttctatgtcaccataaggggagcttagttcgttaagcatccacatgagt |
5366008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 39987802 - 39987510
Alignment:
| Q |
22 |
ttgaatttaaatggaactcccatgagtcttgcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccacca------gcagtga |
115 |
Q |
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||||||||||| || |||||||| || || || ||||||||||| || | ||||||||||||||| |||||||| || || ||||| ||||||| |
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| T |
39987802 |
ttgaatttaaacggcactcccataagcctagcaaatttttccatccttgaaccaatttccttcatgactttttgcaccgagccaccgctgattgcagtga |
39987703 |
T |
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| Q |
116 |
cgatggtagttagacggaggtgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaatatcaat |
215 |
Q |
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| | || |||| ||| |||||||| ||||| |||| || |||||||||||||| | || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
39987702 |
ctacagtggttaaacgaaggtgaggcgtatcatcagagcgggtggccaacgcttcgaggagtgttggccattgagtgcaataagtgttgctaatatcaat |
39987603 |
T |
|
| Q |
216 |
tatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgcatgcgacatggccgaaggttgtccacggactaacttcttggaa |
308 |
Q |
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| T |
39987602 |
tatgtgaagtttagggttaccttccaatgcttctaagatagcaccgttagctgccacgtgtccaaacgttgtccatggactaacttcttggaa |
39987510 |
T |
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