View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13795_low_5 (Length: 504)
Name: NF13795_low_5
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 27225178 - 27225416
Alignment:
| Q |
8 |
cgaagaatatctctcagtaatgcacaaactccactattcagtaaatagaagtactaactta----ttaaataaaatataaccataaaattatttaaaata |
103 |
Q |
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| T |
27225178 |
cgaaaaatatctctcagtaatgcacaaactcccctattcagtaaatagaagtactaacttaattattaaataaaatataaccataaaattatttaaaata |
27225277 |
T |
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| Q |
104 |
taagtctatcaaactttccctttcttgaacctcaagcaattgcttaggtagtaagaatcaggaggtcaaaaccaagggatcaccaatttcattccaactt |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27225278 |
taagtctatcaaactttccctttcttgaaccttaagcaattgcttaggtagtaagaattagggggtcaaaaccaagggatcaccaatttcattccaactt |
27225377 |
T |
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| Q |
204 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27225378 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
27225416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 268 - 496
Target Start/End: Original strand, 27225630 - 27225857
Alignment:
| Q |
268 |
tcttcttcttgttagtaattgtaccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
367 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27225630 |
tcttcttcttgttggtaattataccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
27225729 |
T |
|
| Q |
368 |
gattgaattacgtttcagatctaaaataaaacccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaa |
467 |
Q |
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| T |
27225730 |
gattgaattacgtttcagatctaaaataaaacccataa-tttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaa |
27225828 |
T |
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| Q |
468 |
tttattaaatctatttatctcttcatctc |
496 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
27225829 |
tttattaaatgtatttatctcttcatctc |
27225857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 259306 - 259544
Alignment:
| Q |
8 |
cgaagaatatctctcagtaatgcacaaactccactattcagtaaatagaagtactaactta----ttaaataaaatataaccataaaattatttaaaata |
103 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
259306 |
cgaaaaatatctctcagtaatgcacaaactcccctattcagtaaatagaagtactaacttaattattaaataaaatataaccataaaattatttaaaata |
259405 |
T |
|
| Q |
104 |
taagtctatcaaactttccctttcttgaacctcaagcaattgcttaggtagtaagaatcaggaggtcaaaaccaagggatcaccaatttcattccaactt |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
259406 |
taagtctatcaaactttccctttcttgaaccttaagcaattgcttaggtagtaagaattagggggtcaaaaccaagggatcaccaatttcattccaactt |
259505 |
T |
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| Q |
204 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
242 |
Q |
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| T |
259506 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
259544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 268 - 496
Target Start/End: Original strand, 259758 - 259986
Alignment:
| Q |
268 |
tcttcttcttgttagtaattgtaccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
367 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259758 |
tcttcttcttgttggtaattataccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
259857 |
T |
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| Q |
368 |
gattgaattacgtttcagatctaaaataaaacccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaa |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
259858 |
gattgaattacgtttcagatctaaaataaaacccataattttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaa |
259957 |
T |
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| Q |
468 |
tttattaaatctatttatctcttcatctc |
496 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
259958 |
tttattaaatgtatttatctcttcatctc |
259986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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