View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13795_low_7 (Length: 457)
Name: NF13795_low_7
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Complemental strand, 916152 - 915732
Alignment:
| Q |
21 |
cgatgaaaggcggtagagtgctggtgtcgaattggttaggggaaagattaatagtcgtctgtggtggccaggttggttggatgatcctgatgatgcgtcg |
120 |
Q |
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| T |
916152 |
cgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtcgtctgtggtggccaggttgggtttatgatccgtctgatgcatcg |
916053 |
T |
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| Q |
121 |
gaacttgctttaaagctgaaacaagaataggctcttggtagcttactttgatggaacatttgcttggtgccatccgtcacaattgaagcctttaaggata |
220 |
Q |
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| T |
916052 |
gaacttgctttaaagctgaaacaagaataggctcttggtagcttactttgatggaacatttgcttggtgccatccgtcacaattgaagcctttaaggata |
915953 |
T |
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| Q |
221 |
attttgatgatatggtgggacaaggtagttccaaaactcttacctatgctgttcaagaagctgtaaatgaggttggaagggttctggttacgaagttgtg |
320 |
Q |
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| T |
915952 |
attttgatgatatggtgggacaaggtagttccaaaactcttacctatgctgttcaagaagctgtaaatgaggttggaagggttctggttacgaagttgtg |
915853 |
T |
|
| Q |
321 |
tcgttcgtttgctgtgttgggggagactaagtctgaatttactccaatgttggcgaaaaatttgttagattgatggaataaaacacaaccgtatacattt |
420 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
915852 |
tcgttcgtttgctgtggtgggggagactaagtctgaattcgctccaatgttggcgaaaaatttgttagattgatggaataaaacacaaccgtatacattt |
915753 |
T |
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| Q |
421 |
tattgtatttcattacttatc |
441 |
Q |
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| T |
915752 |
tattgtatttcattacttatc |
915732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 59 - 382
Target Start/End: Complemental strand, 917401 - 917075
Alignment:
| Q |
59 |
ggggaaagattaatagtcgtctgtggtggccaggttggttggatgatcctgatgatgcgtcggaacttgctttaaagctgaaacaa--gaataggctctt |
156 |
Q |
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||||||||||||| |||| |||||||||||||||| || | ||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
917401 |
ggggaaagattaagagtcatctgtggtggccaggtcgggtttatgatccgtctgatgcgccggaacttgctttaaagctgaaacaaaagaatagactctt |
917302 |
T |
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| Q |
157 |
ggtagcttactttgatggaacatttgcttggtgccatccgtcacaattgaagccttt-aaggataattttgatgatatggtgggacaaggtagttccaaa |
255 |
Q |
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| T |
917301 |
ggtagcttactttgatggaacatttgcttggtgccatccgtcacaattgaagccttttaaggataattttgataatatggtgagacaaggtagttccaaa |
917202 |
T |
|
| Q |
256 |
actcttacctatgctgttcaagaagctgtaaatgaggttggaagggttctggttacgaagttgtgtcgttcgtttgctgtgttgggggagactaagtctg |
355 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
917201 |
ccttttacctatgttgttcaagaagctgtaaatgaggttggaagggttctggttacaaagttgagtcgttcgtttgctgtggtgggggagactaagtctg |
917102 |
T |
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| Q |
356 |
aatttactccaatgttggcgaaaaatt |
382 |
Q |
| |
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|||| ||||||||||||| ||||||| |
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| T |
917101 |
aattcgctccaatgttggctaaaaatt |
917075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 59 - 382
Target Start/End: Original strand, 1000286 - 1000612
Alignment:
| Q |
59 |
ggggaaagattaatagtcgtctgtggtggccaggttggttggatgatcctgatgatgcgtcggaacttgctttaaagctgaaacaaga--ataggctctt |
156 |
Q |
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||||||||||||| |||| || ||||||||||||| || | |||||| | ||||||| |||||||||||||||||||||||| | |||| ||||| |
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| T |
1000286 |
ggggaaagattaagagtcatccgtggtggccaggtcgggtttatgatctgtctaatgcgtcagaacttgctttaaagctgaaacaaaataatagactctt |
1000385 |
T |
|
| Q |
157 |
ggtagcttactttgatggaacatttgcttggtgccatccgtcacaattgaagccttt-aaggataattttgatgatatggtgggacaaggtagttccaaa |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1000386 |
ggtagcttactttgatggaacatttgcttggtgccattcgtcacaattgaagccttttaaggataattttgatgatatggtgagacaaggtagttccaaa |
1000485 |
T |
|
| Q |
256 |
actcttacctatgctgttcaagaagctgtaaatgaggttggaagggttctggttacgaagttgtgtcgttcgtttgctgtgttgggggagactaagtctg |
355 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||| |||| | |||||| ||||||| |
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| T |
1000486 |
gcttttacctatgctgttcaagaagctgtaaatgaggttggaagggttctggttacaaagatgagtcgttcatttgttgtggcagaggagaccaagtctg |
1000585 |
T |
|
| Q |
356 |
aatttactccaatgttggcgaaaaatt |
382 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
1000586 |
aattcgctccaatgttggcgaaaaatt |
1000612 |
T |
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